miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7283 5' -59.2 NC_001900.1 + 6396 0.67 0.407082
Target:  5'- aGCGGCCGuGGcCggugcGGCUG-CGCCg -3'
miRNA:   3'- -CGCCGGCuCCuGagga-CCGACaGUGG- -5'
7283 5' -59.2 NC_001900.1 + 41475 0.67 0.434801
Target:  5'- gGgGGuuGGGGGCgcagGGC-GUCACCg -3'
miRNA:   3'- -CgCCggCUCCUGaggaCCGaCAGUGG- -5'
7283 5' -59.2 NC_001900.1 + 40882 0.67 0.444281
Target:  5'- aCGGUguGGGACgcCCUGGCUGacgagcugCACCg -3'
miRNA:   3'- cGCCGgcUCCUGa-GGACCGACa-------GUGG- -5'
7283 5' -59.2 NC_001900.1 + 29447 0.67 0.444281
Target:  5'- aUGGCCGAGGAgaugggUCCgGuGCUGaucggCACCg -3'
miRNA:   3'- cGCCGGCUCCUg-----AGGaC-CGACa----GUGG- -5'
7283 5' -59.2 NC_001900.1 + 35910 0.66 0.463582
Target:  5'- cCGaGCCGAGGugUUCccgGaGCUGUucccaCACCa -3'
miRNA:   3'- cGC-CGGCUCCugAGGa--C-CGACA-----GUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.