Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 7285 | 3' | -52.6 | NC_001900.1 | + | 46131 | 0.7 | 0.574117 |
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Target: 5'- -uCCAucGCCgagCUGGUCGAugACCAGg -3' miRNA: 3'- uuGGUcuUGGa--GGCUAGCUugUGGUC- -5' |
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| 7285 | 3' | -52.6 | NC_001900.1 | + | 14250 | 0.71 | 0.527463 |
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Target: 5'- cAUCAGAACCUCuUGAUCGuguagucgacccGCGCCAGu -3' miRNA: 3'- uUGGUCUUGGAG-GCUAGCu-----------UGUGGUC- -5' |
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| 7285 | 3' | -52.6 | NC_001900.1 | + | 1421 | 0.71 | 0.518729 |
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Target: 5'- gGACCAGAugCUCgGAuacguUCGAGgGCCGu -3' miRNA: 3'- -UUGGUCUugGAGgCU-----AGCUUgUGGUc -5' |
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| 7285 | 3' | -52.6 | NC_001900.1 | + | 15103 | 0.71 | 0.507894 |
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Target: 5'- gGACUGGAGCCaccggCUGGUCGAgcgucggccACACCAGc -3' miRNA: 3'- -UUGGUCUUGGa----GGCUAGCU---------UGUGGUC- -5' |
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| 7285 | 3' | -52.6 | NC_001900.1 | + | 13313 | 0.72 | 0.482294 |
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Target: 5'- gAGCCuGAGCCagaagucauggcgCUGAUCGAGCGCCGa -3' miRNA: 3'- -UUGGuCUUGGa------------GGCUAGCUUGUGGUc -5' |
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| 7285 | 3' | -52.6 | NC_001900.1 | + | 10105 | 0.74 | 0.368672 |
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Target: 5'- uGCUGGAucuuGCCUUCGGcguccUCGAACGCCAGg -3' miRNA: 3'- uUGGUCU----UGGAGGCU-----AGCUUGUGGUC- -5' |
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| 7285 | 3' | -52.6 | NC_001900.1 | + | 33214 | 0.8 | 0.162151 |
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Target: 5'- cGACCAGAGCCUCCGugacgcuggcguacuUCG-GCACCAGc -3' miRNA: 3'- -UUGGUCUUGGAGGCu--------------AGCuUGUGGUC- -5' |
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| 7285 | 3' | -52.6 | NC_001900.1 | + | 31780 | 0.81 | 0.128659 |
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Target: 5'- gAACCAGAACCUgCGGUCGGagaACGCCGa -3' miRNA: 3'- -UUGGUCUUGGAgGCUAGCU---UGUGGUc -5' |
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| 7285 | 3' | -52.6 | NC_001900.1 | + | 9242 | 1.06 | 0.002471 |
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Target: 5'- gAACCAGAACCUCCGAUCGAACACCAGc -3' miRNA: 3'- -UUGGUCUUGGAGGCUAGCUUGUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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