Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7285 | 5' | -59.5 | NC_001900.1 | + | 43177 | 0.66 | 0.475995 |
Target: 5'- gGGCUG-GCuGCUGaACCGGccAGGCCGcagCGg -3' miRNA: 3'- -CCGACuCG-CGGC-UGGUC--UCCGGUa--GC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 39177 | 0.68 | 0.348731 |
Target: 5'- cGCauAGCGCCGAUC-GAGGCCAc-- -3' miRNA: 3'- cCGacUCGCGGCUGGuCUCCGGUagc -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 37247 | 0.67 | 0.408383 |
Target: 5'- uGGUUGccuucguGGaCGCCGACa--GGGCCGUCGu -3' miRNA: 3'- -CCGAC-------UC-GCGGCUGgucUCCGGUAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 36318 | 0.72 | 0.20157 |
Target: 5'- gGGCUccaagaacGAGCGCC-ACgCAGAGGCgAUCa -3' miRNA: 3'- -CCGA--------CUCGCGGcUG-GUCUCCGgUAGc -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 34833 | 0.67 | 0.415701 |
Target: 5'- cGGCgGuGCGCUGACCggucucgaugcgauGGAGaucgaccacGCCAUCGc -3' miRNA: 3'- -CCGaCuCGCGGCUGG--------------UCUC---------CGGUAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 33304 | 0.7 | 0.248281 |
Target: 5'- uGGCUG-GUGCCGAaguacgccagcgucaCGGAGGCUcugGUCGa -3' miRNA: 3'- -CCGACuCGCGGCUg--------------GUCUCCGG---UAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 32922 | 0.66 | 0.456366 |
Target: 5'- cGGCUGAuccacgcuuGacaGCC-ACCGGGGGCCAgcaaCGa -3' miRNA: 3'- -CCGACU---------Cg--CGGcUGGUCUCCGGUa---GC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 31289 | 0.68 | 0.373888 |
Target: 5'- cGCUGAcgGCaCGGCCaagaaGGAGGUCGUCGg -3' miRNA: 3'- cCGACUcgCG-GCUGG-----UCUCCGGUAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 30555 | 0.67 | 0.382542 |
Target: 5'- cGCUG-GUGcCCGACguGAgccGGCCGUUGg -3' miRNA: 3'- cCGACuCGC-GGCUGguCU---CCGGUAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 28067 | 0.66 | 0.485966 |
Target: 5'- cGGCgUGAucuucGUGCCcGCCGGGGGCggCGUCa -3' miRNA: 3'- -CCG-ACU-----CGCGGcUGGUCUCCG--GUAGc -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 27469 | 0.71 | 0.235371 |
Target: 5'- gGGCcGAGcCGCaCGGCCuuGAgccGGCCGUCGg -3' miRNA: 3'- -CCGaCUC-GCG-GCUGGu-CU---CCGGUAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 27177 | 0.74 | 0.15049 |
Target: 5'- aGGCUGGGCGUgGGCCAcGuuGCCcgCGa -3' miRNA: 3'- -CCGACUCGCGgCUGGU-CucCGGuaGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 23883 | 0.72 | 0.196364 |
Target: 5'- cGCcGAuaGCCGACCGGAGcCCGUCGu -3' miRNA: 3'- cCGaCUcgCGGCUGGUCUCcGGUAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 23401 | 0.71 | 0.217911 |
Target: 5'- aGGCcGAGUGgaCCGACCAGGGaGCCAc-- -3' miRNA: 3'- -CCGaCUCGC--GGCUGGUCUC-CGGUagc -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 23200 | 0.66 | 0.446716 |
Target: 5'- gGGCUGcgcccgucAGgGCCGACCAGAaguGGUuccaCGUCu -3' miRNA: 3'- -CCGAC--------UCgCGGCUGGUCU---CCG----GUAGc -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 22879 | 0.66 | 0.485966 |
Target: 5'- cGGCUGc-UGaCCGaACCcggAGAGGUCAUCGg -3' miRNA: 3'- -CCGACucGC-GGC-UGG---UCUCCGGUAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 15116 | 0.67 | 0.400247 |
Target: 5'- cGGCUggucGAGCGUCGGCCAcaccagccGAGGCaCGcuccccgaguUCGg -3' miRNA: 3'- -CCGA----CUCGCGGCUGGU--------CUCCG-GU----------AGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 13033 | 0.66 | 0.476988 |
Target: 5'- gGGCUGAGCcuaacuugacauccaCCGGgaGGGGGCCGUUc -3' miRNA: 3'- -CCGACUCGc--------------GGCUggUCUCCGGUAGc -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 12550 | 0.68 | 0.348731 |
Target: 5'- gGGCUGucGGUGCCGugCAucgccGcGCCGUCGa -3' miRNA: 3'- -CCGAC--UCGCGGCugGUcu---C-CGGUAGC- -5' |
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7285 | 5' | -59.5 | NC_001900.1 | + | 11619 | 0.77 | 0.09177 |
Target: 5'- gGGUcGGGuCGCCGGCCGGAGuGCCuUCGg -3' miRNA: 3'- -CCGaCUC-GCGGCUGGUCUC-CGGuAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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