miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7288 5' -60 NC_001900.1 + 565 0.66 0.438423
Target:  5'- --cGGCCGcagaUCGGGGaucucguaCGCGGAuGAGCUu -3'
miRNA:   3'- acuCCGGU----AGUCCCg-------GCGUCU-CUCGG- -5'
7288 5' -60 NC_001900.1 + 22320 0.66 0.438423
Target:  5'- --cGGCCAUCGcuGGGCCGgGGc-GGUCg -3'
miRNA:   3'- acuCCGGUAGU--CCCGGCgUCucUCGG- -5'
7288 5' -60 NC_001900.1 + 44404 0.66 0.419549
Target:  5'- cGAcGCCGUCGucGuGGUCGaCGGGGAGCUu -3'
miRNA:   3'- aCUcCGGUAGU--C-CCGGC-GUCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 29008 0.66 0.419549
Target:  5'- gGAGGCCGaccuUCGGGGacaucggCGguGuAGAcGCCg -3'
miRNA:   3'- aCUCCGGU----AGUCCCg------GCguC-UCU-CGG- -5'
7288 5' -60 NC_001900.1 + 19740 0.66 0.410298
Target:  5'- aGGGGaaGUCAGGGaucuucUCGguG-GAGCCg -3'
miRNA:   3'- aCUCCggUAGUCCC------GGCguCuCUCGG- -5'
7288 5' -60 NC_001900.1 + 40744 0.66 0.410298
Target:  5'- cGAuGUCGUCAGcGCCGC-GAGcGCCg -3'
miRNA:   3'- aCUcCGGUAGUCcCGGCGuCUCuCGG- -5'
7288 5' -60 NC_001900.1 + 8053 0.66 0.401175
Target:  5'- gUGGGGCCA--GGGGCCuGaCGGcaaGGCCa -3'
miRNA:   3'- -ACUCCGGUagUCCCGG-C-GUCuc-UCGG- -5'
7288 5' -60 NC_001900.1 + 40297 0.66 0.398464
Target:  5'- gUGuGGCCgGUCGGcagugagccgcugcGGCCGUGGuuGGCCg -3'
miRNA:   3'- -ACuCCGG-UAGUC--------------CCGGCGUCucUCGG- -5'
7288 5' -60 NC_001900.1 + 31615 0.67 0.383322
Target:  5'- --cGGCCGguUC-GGGCCGaccGGAGCCa -3'
miRNA:   3'- acuCCGGU--AGuCCCGGCgucUCUCGG- -5'
7288 5' -60 NC_001900.1 + 27647 0.67 0.383322
Target:  5'- -aGGGCUcUCGGGuGaCGUAGAGGGUCg -3'
miRNA:   3'- acUCCGGuAGUCC-CgGCGUCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 34154 0.67 0.357551
Target:  5'- cUGAGGUCGaCAGagcGGCCGaGGAGuucAGCCa -3'
miRNA:   3'- -ACUCCGGUaGUC---CCGGCgUCUC---UCGG- -5'
7288 5' -60 NC_001900.1 + 5748 0.67 0.349234
Target:  5'- cGAGGUCG-CGGcGGUCGCuGAGuGCg -3'
miRNA:   3'- aCUCCGGUaGUC-CCGGCGuCUCuCGg -5'
7288 5' -60 NC_001900.1 + 28014 0.67 0.349234
Target:  5'- ---cGCCGUUcGGGCCGguGuaaccgggugcGGAGCCg -3'
miRNA:   3'- acucCGGUAGuCCCGGCguC-----------UCUCGG- -5'
7288 5' -60 NC_001900.1 + 40784 0.67 0.349234
Target:  5'- -cAGGCCAUaCGGGGaCCGguGcAGcucgucAGCCa -3'
miRNA:   3'- acUCCGGUA-GUCCC-GGCguC-UC------UCGG- -5'
7288 5' -60 NC_001900.1 + 10225 0.67 0.344311
Target:  5'- gGAGGCCggauGUCAGcGGCgGUacucagguacuggggAGGGAGUCc -3'
miRNA:   3'- aCUCCGG----UAGUC-CCGgCG---------------UCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 2207 0.67 0.341057
Target:  5'- --cGGCCAccaagUGGGGUgGCugGGAGGGCCu -3'
miRNA:   3'- acuCCGGUa----GUCCCGgCG--UCUCUCGG- -5'
7288 5' -60 NC_001900.1 + 9125 0.68 0.333019
Target:  5'- aGaAGGCCcgCAcGGGCCgGguGGuGGCCg -3'
miRNA:   3'- aC-UCCGGuaGU-CCCGG-CguCUcUCGG- -5'
7288 5' -60 NC_001900.1 + 25393 0.68 0.333019
Target:  5'- cUGAGGCCAUCuGGuacuucaucGCCaugcGCGGAGucguguGCCc -3'
miRNA:   3'- -ACUCCGGUAGuCC---------CGG----CGUCUCu-----CGG- -5'
7288 5' -60 NC_001900.1 + 39192 0.68 0.317362
Target:  5'- -cAGGUCAUCGGGGagCGCAuAGcGCCg -3'
miRNA:   3'- acUCCGGUAGUCCCg-GCGUcUCuCGG- -5'
7288 5' -60 NC_001900.1 + 27330 0.68 0.309744
Target:  5'- gGAGGCaCAaaaaaAGGGCUcCAGAaGGGCCa -3'
miRNA:   3'- aCUCCG-GUag---UCCCGGcGUCU-CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.