miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7293 5' -59.7 NC_001900.1 + 26032 0.65 0.511675
Target:  5'- uCGGAGAac--CCGUGCCGgaucgagcagaagGCaCCCGCu -3'
miRNA:   3'- cGCCUCUggcaGGCACGGU-------------UG-GGGCG- -5'
7293 5' -59.7 NC_001900.1 + 24672 0.66 0.502607
Target:  5'- gGCGGAGcccauGCCuuGUCCaccaccGCCAGCUCCGa -3'
miRNA:   3'- -CGCCUC-----UGG--CAGGca----CGGUUGGGGCg -5'
7293 5' -59.7 NC_001900.1 + 44702 0.66 0.492614
Target:  5'- uGCGGcagccAGGCCGcuggCCGcUGCCAcACCuuGUc -3'
miRNA:   3'- -CGCC-----UCUGGCa---GGC-ACGGU-UGGggCG- -5'
7293 5' -59.7 NC_001900.1 + 3634 0.66 0.482714
Target:  5'- aGC-GAGACCGgaugcaccaggCCGUuaCCGGCCCCGa -3'
miRNA:   3'- -CGcCUCUGGCa----------GGCAc-GGUUGGGGCg -5'
7293 5' -59.7 NC_001900.1 + 10322 0.66 0.482714
Target:  5'- aUGGAGACgGUCUG-GCgUGACCCgaGCa -3'
miRNA:   3'- cGCCUCUGgCAGGCaCG-GUUGGGg-CG- -5'
7293 5' -59.7 NC_001900.1 + 38247 0.66 0.463208
Target:  5'- -gGGuuGCCGcCCGUGCCAccggAUCCaGCa -3'
miRNA:   3'- cgCCucUGGCaGGCACGGU----UGGGgCG- -5'
7293 5' -59.7 NC_001900.1 + 41948 0.66 0.463208
Target:  5'- cGUGGAGACguugagcgaGUCCGgGCCGAagCCGUc -3'
miRNA:   3'- -CGCCUCUGg--------CAGGCaCGGUUggGGCG- -5'
7293 5' -59.7 NC_001900.1 + 33033 0.66 0.463208
Target:  5'- uGCGGAGcCCGagaCUGgugcUGCUGGCCaCCGCc -3'
miRNA:   3'- -CGCCUCuGGCa--GGC----ACGGUUGG-GGCG- -5'
7293 5' -59.7 NC_001900.1 + 40639 0.66 0.462244
Target:  5'- uGCGGAGgacgccaGCCuucuugCCGUGCCAcucccAgUCCGCa -3'
miRNA:   3'- -CGCCUC-------UGGca----GGCACGGU-----UgGGGCG- -5'
7293 5' -59.7 NC_001900.1 + 28290 0.67 0.453612
Target:  5'- --cGAGGCCGUCCGcaaggacgagGCCAACgacaUCGCa -3'
miRNA:   3'- cgcCUCUGGCAGGCa---------CGGUUGg---GGCG- -5'
7293 5' -59.7 NC_001900.1 + 6444 0.67 0.444124
Target:  5'- cGgGGAGGUgGUCagCGUGCCAuCCuuGCg -3'
miRNA:   3'- -CgCCUCUGgCAG--GCACGGUuGGggCG- -5'
7293 5' -59.7 NC_001900.1 + 34463 0.67 0.433818
Target:  5'- uGUGGAGagaucacGCUGgagCCGUGggAGCCCUGCa -3'
miRNA:   3'- -CGCCUC-------UGGCa--GGCACggUUGGGGCG- -5'
7293 5' -59.7 NC_001900.1 + 22096 0.67 0.42549
Target:  5'- cGUGGAuguuGCCGUCCucaucaGCCAGCuCCCGg -3'
miRNA:   3'- -CGCCUc---UGGCAGGca----CGGUUG-GGGCg -5'
7293 5' -59.7 NC_001900.1 + 30054 0.67 0.416348
Target:  5'- cUGGAcgGugCGUCgGUGCUuccucgcuGACCCCGg -3'
miRNA:   3'- cGCCU--CugGCAGgCACGG--------UUGGGGCg -5'
7293 5' -59.7 NC_001900.1 + 7468 0.67 0.415441
Target:  5'- gGCGGAGACgGggcaagcUCCGgguggugauUGUCGaggcucACCCCGCc -3'
miRNA:   3'- -CGCCUCUGgC-------AGGC---------ACGGU------UGGGGCG- -5'
7293 5' -59.7 NC_001900.1 + 25132 0.68 0.364118
Target:  5'- gGUGGAGGuCauaGUucCCGcaGCCAGCCUCGCa -3'
miRNA:   3'- -CGCCUCU-Gg--CA--GGCa-CGGUUGGGGCG- -5'
7293 5' -59.7 NC_001900.1 + 46623 0.68 0.360801
Target:  5'- cGUGGuAGGuCCaGUCCGcgaugucucgucgGCCGACCCCGa -3'
miRNA:   3'- -CGCC-UCU-GG-CAGGCa------------CGGUUGGGGCg -5'
7293 5' -59.7 NC_001900.1 + 12558 0.69 0.347745
Target:  5'- uCGGgaacGGGCUGUCgGUGCCGugCaucgCCGCg -3'
miRNA:   3'- cGCC----UCUGGCAGgCACGGUugG----GGCG- -5'
7293 5' -59.7 NC_001900.1 + 3781 0.69 0.339758
Target:  5'- uCGGuGACCGUCaucuccacGUCGACCCCGa -3'
miRNA:   3'- cGCCuCUGGCAGgca-----CGGUUGGGGCg -5'
7293 5' -59.7 NC_001900.1 + 7179 0.69 0.339758
Target:  5'- uCGGuGGCCGggacUCCGUGgUAGCCCaGCu -3'
miRNA:   3'- cGCCuCUGGC----AGGCACgGUUGGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.