miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7295 5' -54.6 NC_001900.1 + 17349 0.66 0.759982
Target:  5'- -aCGCCUGC-GUgccgGUCGAGaUGACCg -3'
miRNA:   3'- caGCGGGCGaCAag--UAGCUCaGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 43521 0.66 0.758952
Target:  5'- aUCGCUCGCUggaucugGUUCAUC-AGUUGgguGCCu -3'
miRNA:   3'- cAGCGGGCGA-------CAAGUAGcUCAGC---UGG- -5'
7295 5' -54.6 NC_001900.1 + 1878 0.66 0.749627
Target:  5'- uGUCGCUCGaca-UCAgCGAGUCG-CCg -3'
miRNA:   3'- -CAGCGGGCgacaAGUaGCUCAGCuGG- -5'
7295 5' -54.6 NC_001900.1 + 25614 0.66 0.72857
Target:  5'- cUCGCUCGCUGaagaagggCuacgccaagAUCG-GUCGACCg -3'
miRNA:   3'- cAGCGGGCGACaa------G---------UAGCuCAGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 43871 0.66 0.717889
Target:  5'- uUCGCUCGCgc-UCAcagCGAGgagCGGCCc -3'
miRNA:   3'- cAGCGGGCGacaAGUa--GCUCa--GCUGG- -5'
7295 5' -54.6 NC_001900.1 + 37633 0.66 0.717889
Target:  5'- cGUUGCCCGCgcuccgcacgGUcuUCAcguccuUCGGuacGUCGGCCa -3'
miRNA:   3'- -CAGCGGGCGa---------CA--AGU------AGCU---CAGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 17755 0.67 0.707124
Target:  5'- -gCGCCCGUcag-CAUCGugccgaggguGUCGGCCa -3'
miRNA:   3'- caGCGGGCGacaaGUAGCu---------CAGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 13713 0.67 0.696284
Target:  5'- --aGCCCGCUGaaCGUCGcuggcgcucauGUCGGCa -3'
miRNA:   3'- cagCGGGCGACaaGUAGCu----------CAGCUGg -5'
7295 5' -54.6 NC_001900.1 + 9344 0.67 0.674427
Target:  5'- cGUCGgauaccCCCgGCUGUaCGUCGAcUCGAUCg -3'
miRNA:   3'- -CAGC------GGG-CGACAaGUAGCUcAGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 10508 0.67 0.674427
Target:  5'- --gGCCUGCUGggCA-CGAugGUCGACg -3'
miRNA:   3'- cagCGGGCGACaaGUaGCU--CAGCUGg -5'
7295 5' -54.6 NC_001900.1 + 41208 0.68 0.640262
Target:  5'- -gCGCCCagcaccuGCUGgugCAgCGGGUUGGCCu -3'
miRNA:   3'- caGCGGG-------CGACaa-GUaGCUCAGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 23207 0.68 0.619266
Target:  5'- cUCGCCCggGCUGcgccCGUCaGGGcCGACCa -3'
miRNA:   3'- cAGCGGG--CGACaa--GUAG-CUCaGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 48683 0.68 0.604921
Target:  5'- uGUCGUCaCGCUGUcgcugUCGUCGccggguggcuguccAGUCGcCCa -3'
miRNA:   3'- -CAGCGG-GCGACA-----AGUAGC--------------UCAGCuGG- -5'
7295 5' -54.6 NC_001900.1 + 9436 0.69 0.586224
Target:  5'- uGUCGCuCUGCg----AUCGAGUCGACg -3'
miRNA:   3'- -CAGCG-GGCGacaagUAGCUCAGCUGg -5'
7295 5' -54.6 NC_001900.1 + 37598 0.69 0.586224
Target:  5'- -gCGCUCGUUGUa-GUCGGGguaccgCGACCa -3'
miRNA:   3'- caGCGGGCGACAagUAGCUCa-----GCUGG- -5'
7295 5' -54.6 NC_001900.1 + 43311 0.69 0.564374
Target:  5'- cGUUGCUcaCGCUGgcucccucaCGUCGGGcCGACCg -3'
miRNA:   3'- -CAGCGG--GCGACaa-------GUAGCUCaGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 3411 0.69 0.553528
Target:  5'- gGUCGCCCGCaGgcCAggGGGUgGGCUg -3'
miRNA:   3'- -CAGCGGGCGaCaaGUagCUCAgCUGG- -5'
7295 5' -54.6 NC_001900.1 + 42373 0.69 0.542745
Target:  5'- -cUGCCCGCgucGaUCGcUCGAG-CGACCa -3'
miRNA:   3'- caGCGGGCGa--CaAGU-AGCUCaGCUGG- -5'
7295 5' -54.6 NC_001900.1 + 5988 0.69 0.542745
Target:  5'- -cCGCCCGCUa--CGUCGAGgaaUCGGCg -3'
miRNA:   3'- caGCGGGCGAcaaGUAGCUC---AGCUGg -5'
7295 5' -54.6 NC_001900.1 + 8660 0.7 0.521396
Target:  5'- --gGCCUGCUGUUCGUCa--UCGACa -3'
miRNA:   3'- cagCGGGCGACAAGUAGcucAGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.