miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7307 3' -56.6 NC_001900.1 + 25422 0.66 0.519612
Target:  5'- uAGCGAGGCgAAugucGGAGCUGGCaGGgAu -3'
miRNA:   3'- -UCGUUCCGgUU----CCUUGACCGgUCgUc -5'
7307 3' -56.6 NC_001900.1 + 27446 0.67 0.477355
Target:  5'- uAGCAcccucuGGGCUcugGAGGGGCUGGCUucguGCuGg -3'
miRNA:   3'- -UCGU------UCCGG---UUCCUUGACCGGu---CGuC- -5'
7307 3' -56.6 NC_001900.1 + 28179 0.66 0.541291
Target:  5'- cAGCAGcGCCucGGcGAGCUGGCCuuguGCGa -3'
miRNA:   3'- -UCGUUcCGGu-UC-CUUGACCGGu---CGUc -5'
7307 3' -56.6 NC_001900.1 + 29814 0.68 0.436866
Target:  5'- cGGUggGGCCAAcacGgUGGCCgAGCAGa -3'
miRNA:   3'- -UCGuuCCGGUUccuUgACCGG-UCGUC- -5'
7307 3' -56.6 NC_001900.1 + 32263 0.72 0.230452
Target:  5'- uGGCAugAGGCCGcggaugccgaaauccGGGAACUGGCaggggaauugcuuCGGCAGc -3'
miRNA:   3'- -UCGU--UCCGGU---------------UCCUUGACCG-------------GUCGUC- -5'
7307 3' -56.6 NC_001900.1 + 32465 0.66 0.563263
Target:  5'- cGaCAAGGCCAAGGAaguccuGCUGGacguuCAGUc- -3'
miRNA:   3'- uC-GUUCCGGUUCCU------UGACCg----GUCGuc -5'
7307 3' -56.6 NC_001900.1 + 34536 0.75 0.164664
Target:  5'- cGGCGA-GCCGGGGAugUGGgaCAGCAGc -3'
miRNA:   3'- -UCGUUcCGGUUCCUugACCg-GUCGUC- -5'
7307 3' -56.6 NC_001900.1 + 34551 0.66 0.552244
Target:  5'- gAGC-GGGUCGacAGGAGCcuUGGCCAGgcucCAGa -3'
miRNA:   3'- -UCGuUCCGGU--UCCUUG--ACCGGUC----GUC- -5'
7307 3' -56.6 NC_001900.1 + 36151 0.67 0.508901
Target:  5'- cGGCAAGGUCAucgucaAGGAc--GGCCcuGGCAGc -3'
miRNA:   3'- -UCGUUCCGGU------UCCUugaCCGG--UCGUC- -5'
7307 3' -56.6 NC_001900.1 + 37291 0.73 0.221968
Target:  5'- cAGCGGGGCC-AGGAACcucgucuUGGCCuGCu- -3'
miRNA:   3'- -UCGUUCCGGuUCCUUG-------ACCGGuCGuc -5'
7307 3' -56.6 NC_001900.1 + 37371 0.67 0.477355
Target:  5'- gAGC-AGGCCAagacgAGGuucCUGGCCccgcuGCGGg -3'
miRNA:   3'- -UCGuUCCGGU-----UCCuu-GACCGGu----CGUC- -5'
7307 3' -56.6 NC_001900.1 + 41293 0.71 0.282081
Target:  5'- cGCAAGGCCAAcccGCUGcaCCAGCAGg -3'
miRNA:   3'- uCGUUCCGGUUccuUGACc-GGUCGUC- -5'
7307 3' -56.6 NC_001900.1 + 42186 0.68 0.407831
Target:  5'- uGCAcgaaauGGCCAGGGAGaCUGGCUcuuGCGu -3'
miRNA:   3'- uCGUu-----CCGGUUCCUU-GACCGGu--CGUc -5'
7307 3' -56.6 NC_001900.1 + 43222 0.67 0.494064
Target:  5'- cGCGAGGUgGAGGucgugguccgGGCCAGCc- -3'
miRNA:   3'- uCGUUCCGgUUCCuuga------CCGGUCGuc -5'
7307 3' -56.6 NC_001900.1 + 43561 0.72 0.254194
Target:  5'- gAGCAGgcGGCgCAccGAGCUGGCCGGCc- -3'
miRNA:   3'- -UCGUU--CCG-GUucCUUGACCGGUCGuc -5'
7307 3' -56.6 NC_001900.1 + 44515 0.66 0.541291
Target:  5'- cGCGuGG-CGGGGGACUcccGGCCAGgAGa -3'
miRNA:   3'- uCGUuCCgGUUCCUUGA---CCGGUCgUC- -5'
7307 3' -56.6 NC_001900.1 + 44678 0.66 0.57434
Target:  5'- -aCGAGGCCAAGGAcauguuccGCUGGCacuacGCc- -3'
miRNA:   3'- ucGUUCCGGUUCCU--------UGACCGgu---CGuc -5'
7307 3' -56.6 NC_001900.1 + 44778 0.66 0.541291
Target:  5'- uGGCAGcGGCCAGcGGc-CUGGCUgccGCAGg -3'
miRNA:   3'- -UCGUU-CCGGUU-CCuuGACCGGu--CGUC- -5'
7307 3' -56.6 NC_001900.1 + 46845 0.68 0.417376
Target:  5'- cGCAcGGCCGucGGGAACUGuGCCuugccuucGGCGa -3'
miRNA:   3'- uCGUuCCGGU--UCCUUGAC-CGG--------UCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.