Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7307 | 3' | -56.6 | NC_001900.1 | + | 312 | 0.69 | 0.362221 |
Target: 5'- cGGCccaacaAGGGCCGGGGAAUUGauCCGGCAa -3' miRNA: 3'- -UCG------UUCCGGUUCCUUGACc-GGUCGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 1247 | 0.69 | 0.380035 |
Target: 5'- uGGCGGcGGCagcGGAGCUGG-CGGCGGg -3' miRNA: 3'- -UCGUU-CCGguuCCUUGACCgGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 2966 | 0.67 | 0.467054 |
Target: 5'- gAGCGAGG-CGAGcGAACUG-CCAGuCGGu -3' miRNA: 3'- -UCGUUCCgGUUC-CUUGACcGGUC-GUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 6511 | 0.66 | 0.552244 |
Target: 5'- cAGCucGGCCc----GCUGGCCAGcCAGa -3' miRNA: 3'- -UCGuuCCGGuuccuUGACCGGUC-GUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 6614 | 0.8 | 0.066835 |
Target: 5'- uGGCuguAGGCCGguuggaugccguugAGGAucugGCUGGCCAGCGGg -3' miRNA: 3'- -UCGu--UCCGGU--------------UCCU----UGACCGGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 6720 | 0.67 | 0.498283 |
Target: 5'- cGGCAggcAGGCCAGGcccgaggggaucGGGCUGGCCcGUg- -3' miRNA: 3'- -UCGU---UCCGGUUC------------CUUGACCGGuCGuc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 7214 | 0.66 | 0.578786 |
Target: 5'- gAGCuuGGCCAgcguccgaucaccgaGGGAAUUGcGUUGGCGGg -3' miRNA: 3'- -UCGuuCCGGU---------------UCCUUGAC-CGGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 8071 | 0.69 | 0.371055 |
Target: 5'- cGGCAAGGCCAAcGAA--GGCCAcGCGa -3' miRNA: 3'- -UCGUUCCGGUUcCUUgaCCGGU-CGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 10636 | 0.68 | 0.456869 |
Target: 5'- cGGUuguGGCUuGGGAGCUGGCguGgGGu -3' miRNA: 3'- -UCGuu-CCGGuUCCUUGACCGguCgUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 11620 | 0.67 | 0.498283 |
Target: 5'- aGGCAuacGUCAAGGAGCUucGCCAGgAGg -3' miRNA: 3'- -UCGUuc-CGGUUCCUUGAc-CGGUCgUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 13299 | 0.7 | 0.312339 |
Target: 5'- cGUuguGGGCCAAGGAGcCUGaGCCAGaAGu -3' miRNA: 3'- uCGu--UCCGGUUCCUU-GAC-CGGUCgUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 15349 | 0.72 | 0.247585 |
Target: 5'- uAGUAcAGGCCGAGcgacugcucaucGAACUGGUgCAGCAGg -3' miRNA: 3'- -UCGU-UCCGGUUC------------CUUGACCG-GUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 15883 | 0.7 | 0.344996 |
Target: 5'- --gGAGGCCGAGGAGCUGGUgGaCGa -3' miRNA: 3'- ucgUUCCGGUUCCUUGACCGgUcGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 17146 | 0.68 | 0.456869 |
Target: 5'- gGGUGAGGCCAGucuGGAACgucgaGGagaCGGCGGu -3' miRNA: 3'- -UCGUUCCGGUU---CCUUGa----CCg--GUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 17203 | 0.66 | 0.57434 |
Target: 5'- cGCAGGGUCc-GGGGCU--CCAGCAGc -3' miRNA: 3'- uCGUUCCGGuuCCUUGAccGGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 17747 | 0.74 | 0.183966 |
Target: 5'- cAGCAucguGCCGAGGGugUcGGCCAGCGu -3' miRNA: 3'- -UCGUuc--CGGUUCCUugA-CCGGUCGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 17915 | 0.68 | 0.446806 |
Target: 5'- gGGCAgguacGGGCCGAGcGAGgUGaCCAGCGu -3' miRNA: 3'- -UCGU-----UCCGGUUC-CUUgACcGGUCGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 18340 | 1.08 | 0.000577 |
Target: 5'- gAGCAAGGCCAAGGAACUGGCCAGCAGc -3' miRNA: 3'- -UCGUUCCGGUUCCUUGACCGGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 23175 | 0.72 | 0.247585 |
Target: 5'- gAGCc-GGCCGAGcagaucgguGAGCUGGCCGGUAc -3' miRNA: 3'- -UCGuuCCGGUUC---------CUUGACCGGUCGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 24629 | 0.66 | 0.519612 |
Target: 5'- cGUggGGCCAAGGc---GGCUucGGCGGu -3' miRNA: 3'- uCGuuCCGGUUCCuugaCCGG--UCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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