Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7307 | 3' | -56.6 | NC_001900.1 | + | 18340 | 1.08 | 0.000577 |
Target: 5'- gAGCAAGGCCAAGGAACUGGCCAGCAGc -3' miRNA: 3'- -UCGUUCCGGUUCCUUGACCGGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 24629 | 0.66 | 0.519612 |
Target: 5'- cGUggGGCCAAGGc---GGCUucGGCGGu -3' miRNA: 3'- uCGuuCCGGUUCCuugaCCGG--UCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 46845 | 0.68 | 0.417376 |
Target: 5'- cGCAcGGCCGucGGGAACUGuGCCuugccuucGGCGa -3' miRNA: 3'- uCGUuCCGGU--UCCUUGAC-CGG--------UCGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 1247 | 0.69 | 0.380035 |
Target: 5'- uGGCGGcGGCagcGGAGCUGG-CGGCGGg -3' miRNA: 3'- -UCGUU-CCGguuCCUUGACCgGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 312 | 0.69 | 0.362221 |
Target: 5'- cGGCccaacaAGGGCCGGGGAAUUGauCCGGCAa -3' miRNA: 3'- -UCG------UUCCGGUUCCUUGACc-GGUCGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 15883 | 0.7 | 0.344996 |
Target: 5'- --gGAGGCCGAGGAGCUGGUgGaCGa -3' miRNA: 3'- ucgUUCCGGUUCCUUGACCGgUcGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 7214 | 0.66 | 0.578786 |
Target: 5'- gAGCuuGGCCAgcguccgaucaccgaGGGAAUUGcGUUGGCGGg -3' miRNA: 3'- -UCGuuCCGGU---------------UCCUUGAC-CGGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 6511 | 0.66 | 0.552244 |
Target: 5'- cAGCucGGCCc----GCUGGCCAGcCAGa -3' miRNA: 3'- -UCGuuCCGGuuccuUGACCGGUC-GUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 11620 | 0.67 | 0.498283 |
Target: 5'- aGGCAuacGUCAAGGAGCUucGCCAGgAGg -3' miRNA: 3'- -UCGUuc-CGGUUCCUUGAc-CGGUCgUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 8071 | 0.69 | 0.371055 |
Target: 5'- cGGCAAGGCCAAcGAA--GGCCAcGCGa -3' miRNA: 3'- -UCGUUCCGGUUcCUUgaCCGGU-CGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 37291 | 0.73 | 0.221968 |
Target: 5'- cAGCGGGGCC-AGGAACcucgucuUGGCCuGCu- -3' miRNA: 3'- -UCGUUCCGGuUCCUUG-------ACCGGuCGuc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 34551 | 0.66 | 0.552244 |
Target: 5'- gAGC-GGGUCGacAGGAGCcuUGGCCAGgcucCAGa -3' miRNA: 3'- -UCGuUCCGGU--UCCUUG--ACCGGUC----GUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 23175 | 0.72 | 0.247585 |
Target: 5'- gAGCc-GGCCGAGcagaucgguGAGCUGGCCGGUAc -3' miRNA: 3'- -UCGuuCCGGUUC---------CUUGACCGGUCGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 43222 | 0.67 | 0.494064 |
Target: 5'- cGCGAGGUgGAGGucgugguccgGGCCAGCc- -3' miRNA: 3'- uCGUUCCGgUUCCuuga------CCGGUCGuc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 17203 | 0.66 | 0.57434 |
Target: 5'- cGCAGGGUCc-GGGGCU--CCAGCAGc -3' miRNA: 3'- uCGUUCCGGuuCCUUGAccGGUCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 13299 | 0.7 | 0.312339 |
Target: 5'- cGUuguGGGCCAAGGAGcCUGaGCCAGaAGu -3' miRNA: 3'- uCGu--UCCGGUUCCUU-GAC-CGGUCgUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 28179 | 0.66 | 0.541291 |
Target: 5'- cAGCAGcGCCucGGcGAGCUGGCCuuguGCGa -3' miRNA: 3'- -UCGUUcCGGu-UC-CUUGACCGGu---CGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 42186 | 0.68 | 0.407831 |
Target: 5'- uGCAcgaaauGGCCAGGGAGaCUGGCUcuuGCGu -3' miRNA: 3'- uCGUu-----CCGGUUCCUU-GACCGGu--CGUc -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 29814 | 0.68 | 0.436866 |
Target: 5'- cGGUggGGCCAAcacGgUGGCCgAGCAGa -3' miRNA: 3'- -UCGuuCCGGUUccuUgACCGG-UCGUC- -5' |
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7307 | 3' | -56.6 | NC_001900.1 | + | 17915 | 0.68 | 0.446806 |
Target: 5'- gGGCAgguacGGGCCGAGcGAGgUGaCCAGCGu -3' miRNA: 3'- -UCGU-----UCCGGUUC-CUUgACcGGUCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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