Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7311 | 3' | -50.6 | NC_001900.1 | + | 20726 | 1.13 | 0.001281 |
Target: 5'- cGAAGCAGAUCCUUGAGAACCACCAGCu -3' miRNA: 3'- -CUUCGUCUAGGAACUCUUGGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 26150 | 0.77 | 0.301317 |
Target: 5'- cGAGCgugcgugcuguagAGAUCCUUGGu-GCCGCCAGCg -3' miRNA: 3'- cUUCG-------------UCUAGGAACUcuUGGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 23083 | 0.75 | 0.389107 |
Target: 5'- cAAGCAGGUcgcCCUUGGGGuugaugccgaggGCCugCAGCa -3' miRNA: 3'- cUUCGUCUA---GGAACUCU------------UGGugGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 39712 | 0.74 | 0.48021 |
Target: 5'- -cAGCAGAgccagcgCgaUGAGAucaGCCGCCAGCu -3' miRNA: 3'- cuUCGUCUa------GgaACUCU---UGGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 25438 | 0.73 | 0.495317 |
Target: 5'- cGAGGCgcaccaucAGcUCCUUGGucgucgcaccggccuGAGCCGCCAGCg -3' miRNA: 3'- -CUUCG--------UCuAGGAACU---------------CUUGGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 30813 | 0.72 | 0.592021 |
Target: 5'- --cGCAGAUCCUggcgaagcUGGuGGACCcCCGGCc -3' miRNA: 3'- cuuCGUCUAGGA--------ACU-CUUGGuGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 24673 | 0.7 | 0.684445 |
Target: 5'- -uGGCGGAgcccaugCCUUGuccaccACCGCCAGCu -3' miRNA: 3'- cuUCGUCUa------GGAACucu---UGGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 28616 | 0.7 | 0.695878 |
Target: 5'- uGAAGCGGAcgguugcCCUgGAGAugCGCguGCa -3' miRNA: 3'- -CUUCGUCUa------GGAaCUCUugGUGguCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 3285 | 0.69 | 0.718525 |
Target: 5'- --uGCGGAUCCUUucaaguucgGAGggUCAacccCCGGCg -3' miRNA: 3'- cuuCGUCUAGGAA---------CUCuuGGU----GGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 29571 | 0.69 | 0.762575 |
Target: 5'- cGAGUAcGUCCgaGAGcgguCCACCGGCa -3' miRNA: 3'- cUUCGUcUAGGaaCUCuu--GGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 35579 | 0.68 | 0.77325 |
Target: 5'- aGAGGguGAaaucCCUUGGGGGCCAaCAGg -3' miRNA: 3'- -CUUCguCUa---GGAACUCUUGGUgGUCg -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 2593 | 0.68 | 0.77325 |
Target: 5'- -cGGCAGAUCgCUUGcAGGuuagACCGCgAGUg -3' miRNA: 3'- cuUCGUCUAG-GAAC-UCU----UGGUGgUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 2231 | 0.68 | 0.77325 |
Target: 5'- aGGGCcuggAGAUCCUUGAGuacucggguGACgGCCAGg -3' miRNA: 3'- cUUCG----UCUAGGAACUC---------UUGgUGGUCg -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 39163 | 0.68 | 0.783764 |
Target: 5'- cGAGGCcacaagcugaGGAgucaaaCUUGAcAGCCACCGGCa -3' miRNA: 3'- -CUUCG----------UCUag----GAACUcUUGGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 32922 | 0.68 | 0.814207 |
Target: 5'- -cGGCuGAUCCacgcUUGAcAGCCACCGGg -3' miRNA: 3'- cuUCGuCUAGG----AACUcUUGGUGGUCg -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 18117 | 0.67 | 0.823948 |
Target: 5'- -cAGcCAGGUUgaUGAcgaucuGGACCACCGGCa -3' miRNA: 3'- cuUC-GUCUAGgaACU------CUUGGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 13737 | 0.67 | 0.823948 |
Target: 5'- cGAAGCGGAUCCUccGGucuGCUACU-GCg -3' miRNA: 3'- -CUUCGUCUAGGAacUCu--UGGUGGuCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 35352 | 0.67 | 0.823948 |
Target: 5'- cGGAGCAGAUCUUcucgcucuccUGGGAGCUgauACCGa- -3' miRNA: 3'- -CUUCGUCUAGGA----------ACUCUUGG---UGGUcg -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 6777 | 0.67 | 0.833464 |
Target: 5'- cGggGUAGuugCCgaUGGGcuGCCACCGGUa -3' miRNA: 3'- -CuuCGUCua-GGa-ACUCu-UGGUGGUCG- -5' |
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7311 | 3' | -50.6 | NC_001900.1 | + | 35130 | 0.67 | 0.851784 |
Target: 5'- cGAGGCGGGUCagUUGucGAGCCGCUAc- -3' miRNA: 3'- -CUUCGUCUAGg-AACu-CUUGGUGGUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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