miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7311 3' -50.6 NC_001900.1 + 10368 0.67 0.860566
Target:  5'- cGGAGCAuGUCCggGGGAACgucgccacccuuCAUCAGCc -3'
miRNA:   3'- -CUUCGUcUAGGaaCUCUUG------------GUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 9870 0.66 0.869084
Target:  5'- aGAGcCGGGUCCgguucgGAagcgGGACCACCGGg -3'
miRNA:   3'- cUUC-GUCUAGGaa----CU----CUUGGUGGUCg -5'
7311 3' -50.6 NC_001900.1 + 21404 0.66 0.869084
Target:  5'- --uGCGGGg-CUUGAGGACaucguCACCGGCc -3'
miRNA:   3'- cuuCGUCUagGAACUCUUG-----GUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 9275 0.66 0.892972
Target:  5'- cGAGGCuGAgcgCCgaccaGAG-GCCAUCGGCg -3'
miRNA:   3'- -CUUCGuCUa--GGaa---CUCuUGGUGGUCG- -5'
7311 3' -50.6 NC_001900.1 + 37781 0.66 0.900357
Target:  5'- cGAGCGGAUCUacGAgGAGCCugUcgagGGCg -3'
miRNA:   3'- cUUCGUCUAGGaaCU-CUUGGugG----UCG- -5'
7311 3' -50.6 NC_001900.1 + 16444 0.66 0.907444
Target:  5'- --cGCGGGUaugCCUUGGGuGCCuuCGGCu -3'
miRNA:   3'- cuuCGUCUA---GGAACUCuUGGugGUCG- -5'
7311 3' -50.6 NC_001900.1 + 23183 0.66 0.907444
Target:  5'- cGAGCAGAUCggUGAGc-UgGCCGGUa -3'
miRNA:   3'- cUUCGUCUAGgaACUCuuGgUGGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.