Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7311 | 3' | -50.6 | NC_001900.1 | + | 10368 | 0.67 | 0.860566 |
Target: 5'- cGGAGCAuGUCCggGGGAACgucgccacccuuCAUCAGCc -3' miRNA: 3'- -CUUCGUcUAGGaaCUCUUG------------GUGGUCG- -5' |
|||||||
7311 | 3' | -50.6 | NC_001900.1 | + | 9870 | 0.66 | 0.869084 |
Target: 5'- aGAGcCGGGUCCgguucgGAagcgGGACCACCGGg -3' miRNA: 3'- cUUC-GUCUAGGaa----CU----CUUGGUGGUCg -5' |
|||||||
7311 | 3' | -50.6 | NC_001900.1 | + | 21404 | 0.66 | 0.869084 |
Target: 5'- --uGCGGGg-CUUGAGGACaucguCACCGGCc -3' miRNA: 3'- cuuCGUCUagGAACUCUUG-----GUGGUCG- -5' |
|||||||
7311 | 3' | -50.6 | NC_001900.1 | + | 9275 | 0.66 | 0.892972 |
Target: 5'- cGAGGCuGAgcgCCgaccaGAG-GCCAUCGGCg -3' miRNA: 3'- -CUUCGuCUa--GGaa---CUCuUGGUGGUCG- -5' |
|||||||
7311 | 3' | -50.6 | NC_001900.1 | + | 37781 | 0.66 | 0.900357 |
Target: 5'- cGAGCGGAUCUacGAgGAGCCugUcgagGGCg -3' miRNA: 3'- cUUCGUCUAGGaaCU-CUUGGugG----UCG- -5' |
|||||||
7311 | 3' | -50.6 | NC_001900.1 | + | 16444 | 0.66 | 0.907444 |
Target: 5'- --cGCGGGUaugCCUUGGGuGCCuuCGGCu -3' miRNA: 3'- cuuCGUCUA---GGAACUCuUGGugGUCG- -5' |
|||||||
7311 | 3' | -50.6 | NC_001900.1 | + | 23183 | 0.66 | 0.907444 |
Target: 5'- cGAGCAGAUCggUGAGc-UgGCCGGUa -3' miRNA: 3'- cUUCGUCUAGgaACUCuuGgUGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home