Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7313 | 3' | -63.3 | NC_001900.1 | + | 8078 | 0.78 | 0.045938 |
Target: 5'- gCCaacgaaGGCCaC-GCGAUGGCCGAGGUCa -3' miRNA: 3'- gGGg-----CCGG-GuCGCUACCGGCUCCAGc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 25469 | 0.67 | 0.295779 |
Target: 5'- -aCCGGCcugagccgCCAGCG-UGGCUcccacggcccgGAGGUCGu -3' miRNA: 3'- ggGGCCG--------GGUCGCuACCGG-----------CUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 10503 | 0.66 | 0.310012 |
Target: 5'- gCCUCGGCCU-GCug-GGCaCGAuGGUCGa -3' miRNA: 3'- -GGGGCCGGGuCGcuaCCG-GCU-CCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 43211 | 0.66 | 0.347849 |
Target: 5'- uCCCaCaGCUCcGCGA-GGUgGAGGUCGu -3' miRNA: 3'- -GGG-GcCGGGuCGCUaCCGgCUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 20258 | 0.7 | 0.162894 |
Target: 5'- aCCUGGCCaagugGGUGAUGaaccaCCGGGGUCGa -3' miRNA: 3'- gGGGCCGGg----UCGCUACc----GGCUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 2415 | 0.7 | 0.162894 |
Target: 5'- cUCCCGGUCCuuucuGCugccgGGUGGCUguguGAGGUCGa -3' miRNA: 3'- -GGGGCCGGGu----CG-----CUACCGG----CUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 40361 | 0.7 | 0.171516 |
Target: 5'- aCCCGuGCUCGGCGA--GCCG-GGUCa -3' miRNA: 3'- gGGGC-CGGGUCGCUacCGGCuCCAGc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 33170 | 0.7 | 0.182399 |
Target: 5'- gCCCUGGCCCAGCu-UGGCaaccuCGucgggaucaacgcccAGGUCGa -3' miRNA: 3'- -GGGGCCGGGUCGcuACCG-----GC---------------UCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 37067 | 0.68 | 0.23801 |
Target: 5'- aCCCGGacgccgCCA-CGGUGGCCGuGcGUCGa -3' miRNA: 3'- gGGGCCg-----GGUcGCUACCGGCuC-CAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 4984 | 0.67 | 0.293688 |
Target: 5'- aCCCCGGCaugcucgucgggcuCCAGCacGgcGGCgGGGGcCGg -3' miRNA: 3'- -GGGGCCG--------------GGUCG--CuaCCGgCUCCaGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 5065 | 0.68 | 0.243334 |
Target: 5'- uCCCCgguGGCCCGGUGAaGGUcucgcaaCGAGGcgUCGa -3' miRNA: 3'- -GGGG---CCGGGUCGCUaCCG-------GCUCC--AGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 15807 | 0.68 | 0.23801 |
Target: 5'- gCCagaaGGCCC-GCGAagccgUGGUCGAGGcCGu -3' miRNA: 3'- gGGg---CCGGGuCGCU-----ACCGGCUCCaGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 18178 | 0.73 | 0.101331 |
Target: 5'- cUCCUGGUCCAGCGGUGuGCagcAGGUCu -3' miRNA: 3'- -GGGGCCGGGUCGCUAC-CGgc-UCCAGc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 8169 | 0.67 | 0.262433 |
Target: 5'- uCCCCGGCaCCgAGaCGGUcGCCGAGaaggcguacGUCGa -3' miRNA: 3'- -GGGGCCG-GG-UC-GCUAcCGGCUC---------CAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 47578 | 0.73 | 0.112764 |
Target: 5'- gUCUCaGGCCCAGCGAcguuucgucGGCCGGGGguggCGa -3' miRNA: 3'- -GGGG-CCGGGUCGCUa--------CCGGCUCCa---GC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 43255 | 0.69 | 0.220965 |
Target: 5'- gUCUCGGUCCuccgcuaccuuGGCG-UGGCCGAuguguaGGUCGg -3' miRNA: 3'- -GGGGCCGGG-----------UCGCuACCGGCU------CCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 6724 | 0.67 | 0.262433 |
Target: 5'- aCCCCgcugcGGCCUuccCGAugUGGCCGucGGUCGa -3' miRNA: 3'- -GGGG-----CCGGGuc-GCU--ACCGGCu-CCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 6429 | 0.66 | 0.302831 |
Target: 5'- gCUCgCGGCCaAGCaGAacgcugaGGCUGAGGUCGa -3' miRNA: 3'- -GGG-GCCGGgUCG-CUa------CCGGCUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 36629 | 0.72 | 0.128752 |
Target: 5'- cUCCCuGUCCAGaCGAcGGUCGAGGUUGc -3' miRNA: 3'- -GGGGcCGGGUC-GCUaCCGGCUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 26069 | 0.7 | 0.167155 |
Target: 5'- aUCCCGGCCCAccacGCccgGAcaagGGCgGGGGUCa -3' miRNA: 3'- -GGGGCCGGGU----CG---CUa---CCGgCUCCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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