Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7313 | 3' | -63.3 | NC_001900.1 | + | 30716 | 0.66 | 0.32476 |
Target: 5'- cCCaCCGGCCC--CGAaaGGCCGgGGGUCc -3' miRNA: 3'- -GG-GGCCGGGucGCUa-CCGGC-UCCAGc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 43211 | 0.66 | 0.347849 |
Target: 5'- uCCCaCaGCUCcGCGA-GGUgGAGGUCGu -3' miRNA: 3'- -GGG-GcCGGGuCGCUaCCGgCUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 310 | 0.66 | 0.347849 |
Target: 5'- -aCCGGCCCAaCaagGGCCGGGGa-- -3' miRNA: 3'- ggGGCCGGGUcGcuaCCGGCUCCagc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 20258 | 0.7 | 0.162894 |
Target: 5'- aCCUGGCCaagugGGUGAUGaaccaCCGGGGUCGa -3' miRNA: 3'- gGGGCCGGg----UCGCUACc----GGCUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 6724 | 0.67 | 0.262433 |
Target: 5'- aCCCCgcugcGGCCUuccCGAugUGGCCGucGGUCGa -3' miRNA: 3'- -GGGG-----CCGGGuc-GCU--ACCGGCu-CCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 10242 | 0.67 | 0.275391 |
Target: 5'- gCCCUgauGGCCuCAGCGGaGGCCGGauGUCa -3' miRNA: 3'- -GGGG---CCGG-GUCGCUaCCGGCUc-CAGc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 23296 | 0.67 | 0.288855 |
Target: 5'- gCCUGcaGCUCGGCGAUGGCagaCGAGuUCGa -3' miRNA: 3'- gGGGC--CGGGUCGCUACCG---GCUCcAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 10575 | 0.67 | 0.288855 |
Target: 5'- aCCaUCGuGCCCAGCa--GGCCGAGGcccaUCGc -3' miRNA: 3'- -GG-GGC-CGGGUCGcuaCCGGCUCC----AGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 27965 | 0.66 | 0.332328 |
Target: 5'- --gCGGCCCAGCGAUcGGaCUGugaaaggagcaAGGUUGg -3' miRNA: 3'- gggGCCGGGUCGCUA-CC-GGC-----------UCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 4070 | 0.67 | 0.262433 |
Target: 5'- gCCUGGCUCgaccaccgagacGGUGAUGGCCuucGAGGUg- -3' miRNA: 3'- gGGGCCGGG------------UCGCUACCGG---CUCCAgc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 21356 | 0.67 | 0.262433 |
Target: 5'- -aCC-GCCCAGCGggGGC--AGGUCGa -3' miRNA: 3'- ggGGcCGGGUCGCuaCCGgcUCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 36507 | 0.67 | 0.262433 |
Target: 5'- gCUgCGGCCCGGUGA-GGCCGuGaUCu -3' miRNA: 3'- -GGgGCCGGGUCGCUaCCGGCuCcAGc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 23388 | 0.7 | 0.175527 |
Target: 5'- aCUCGGCCCAGCcggGGCCGAccgccguGGUg- -3' miRNA: 3'- gGGGCCGGGUCGcuaCCGGCU-------CCAgc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 9195 | 0.7 | 0.175978 |
Target: 5'- aCCCGGCCC-GUGcgGGCCuucuugcucauGAGGUa- -3' miRNA: 3'- gGGGCCGGGuCGCuaCCGG-----------CUCCAgc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 35809 | 0.69 | 0.215518 |
Target: 5'- cCCCUGGCuacggCCAGCGGaGGCCGAcGUg- -3' miRNA: 3'- -GGGGCCG-----GGUCGCUaCCGGCUcCAgc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 29018 | 0.68 | 0.226528 |
Target: 5'- aCCUGGgUCGGCgcuGAUGGCCGAcgacguaaaGGUCa -3' miRNA: 3'- gGGGCCgGGUCG---CUACCGGCU---------CCAGc -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 22324 | 0.69 | 0.215518 |
Target: 5'- aCCUCGGCCaucGCug-GGCCGGGG-CGg -3' miRNA: 3'- -GGGGCCGGgu-CGcuaCCGGCUCCaGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 8632 | 0.68 | 0.232209 |
Target: 5'- gCCCCGGUCCAGCGGa-GCC-AGcUCGa -3' miRNA: 3'- -GGGGCCGGGUCGCUacCGGcUCcAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 19612 | 0.68 | 0.232209 |
Target: 5'- uCCCaCGGCCaCGGCGGUGuCCagaaguucGGGUCGa -3' miRNA: 3'- -GGG-GCCGG-GUCGCUACcGGc-------UCCAGC- -5' |
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7313 | 3' | -63.3 | NC_001900.1 | + | 35928 | 0.68 | 0.256142 |
Target: 5'- gCCUGGCUCGGaGAUGuaccgaGCCGAGGUg- -3' miRNA: 3'- gGGGCCGGGUCgCUAC------CGGCUCCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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