miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7325 5' -56.2 NC_001900.1 + 25902 1.12 0.000517
Target:  5'- aCUACGUCCAGCUCCUCCGGUGUGAGGg -3'
miRNA:   3'- -GAUGCAGGUCGAGGAGGCCACACUCC- -5'
7325 5' -56.2 NC_001900.1 + 41591 0.79 0.115546
Target:  5'- -cACGUCCAGCUUcugggCUCCGGUGUcGGGc -3'
miRNA:   3'- gaUGCAGGUCGAG-----GAGGCCACAcUCC- -5'
7325 5' -56.2 NC_001900.1 + 19873 0.75 0.221667
Target:  5'- ---aGUCgGGCUCC-CCGGUGUGGGc -3'
miRNA:   3'- gaugCAGgUCGAGGaGGCCACACUCc -5'
7325 5' -56.2 NC_001900.1 + 35795 0.72 0.343186
Target:  5'- cCUGCGaCCAGUUCUccaggagcaucggcuUCUGGUGUGGGa -3'
miRNA:   3'- -GAUGCaGGUCGAGG---------------AGGCCACACUCc -5'
7325 5' -56.2 NC_001900.1 + 16967 0.67 0.571641
Target:  5'- -aGCGUUCGGCgCUggagCCGGUGUGGu- -3'
miRNA:   3'- gaUGCAGGUCGaGGa---GGCCACACUcc -5'
7325 5' -56.2 NC_001900.1 + 3685 0.67 0.593319
Target:  5'- aUGCGUucgaCCAGCUCCUCgGGgucgacGUGGa- -3'
miRNA:   3'- gAUGCA----GGUCGAGGAGgCCa-----CACUcc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.