miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7329 5' -58.7 NC_001900.1 + 2259 0.68 0.363039
Target:  5'- uGACGGCCaGGUCgagGUCA--GCGACGa -3'
miRNA:   3'- -CUGCCGGgCCAGa--CAGUggUGCUGUa -5'
7329 5' -58.7 NC_001900.1 + 8932 0.67 0.407324
Target:  5'- cGCGGUCCucgaaggcgaGGUCUGgCACgACGGCAa -3'
miRNA:   3'- cUGCCGGG----------CCAGACaGUGgUGCUGUa -5'
7329 5' -58.7 NC_001900.1 + 24970 0.66 0.484751
Target:  5'- --aGGUCCGGUCUcgGUaCACCAuguCGGCAg -3'
miRNA:   3'- cugCCGGGCCAGA--CA-GUGGU---GCUGUa -5'
7329 5' -58.7 NC_001900.1 + 28728 1.05 0.000769
Target:  5'- aGACGGCCCGGUCUGUCACCACGACAUc -3'
miRNA:   3'- -CUGCCGGGCCAGACAGUGGUGCUGUA- -5'
7329 5' -58.7 NC_001900.1 + 28904 0.66 0.454843
Target:  5'- cAUGGCuCCGGUCUGguucggggGCCACGuCAa -3'
miRNA:   3'- cUGCCG-GGCCAGACag------UGGUGCuGUa -5'
7329 5' -58.7 NC_001900.1 + 30584 0.66 0.454843
Target:  5'- cACGGCCCGGaUCUGcagugcgcuggCACCGCuggugcccGACGUg -3'
miRNA:   3'- cUGCCGGGCC-AGACa----------GUGGUG--------CUGUA- -5'
7329 5' -58.7 NC_001900.1 + 31305 0.7 0.277866
Target:  5'- uGGCuGCCCGGUUcGUCGCUgACGGCAc -3'
miRNA:   3'- -CUGcCGGGCCAGaCAGUGG-UGCUGUa -5'
7329 5' -58.7 NC_001900.1 + 37327 0.7 0.284904
Target:  5'- cGACGGCCCuGUCggcGUCcacgaaggcaACCACGACc- -3'
miRNA:   3'- -CUGCCGGGcCAGa--CAG----------UGGUGCUGua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.