miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7332 5' -57.5 NC_001900.1 + 28948 0.66 0.561265
Target:  5'- -gGCC-AUCAGCGCCG-ACCCAg--- -3'
miRNA:   3'- caCGGcUAGUCGUGGCcUGGGUagag -5'
7332 5' -57.5 NC_001900.1 + 48121 0.66 0.550467
Target:  5'- aGUGuCCGcacuuuAUCGGCAUCGGACuuCCGcCUCa -3'
miRNA:   3'- -CAC-GGC------UAGUCGUGGCCUG--GGUaGAG- -5'
7332 5' -57.5 NC_001900.1 + 12233 0.66 0.539733
Target:  5'- gGUGCCGAUgGGUACCacGGGCCagaagAUCcCg -3'
miRNA:   3'- -CACGGCUAgUCGUGG--CCUGGg----UAGaG- -5'
7332 5' -57.5 NC_001900.1 + 10989 0.66 0.517434
Target:  5'- -cGCCGAcagaucaUCGGCGCUGucaagaacGACCCAgCUCc -3'
miRNA:   3'- caCGGCU-------AGUCGUGGC--------CUGGGUaGAG- -5'
7332 5' -57.5 NC_001900.1 + 9780 0.66 0.515329
Target:  5'- -gGCgCGGUCccGGUggucccgcuuccgaACCGGACCCGgcUCUCg -3'
miRNA:   3'- caCG-GCUAG--UCG--------------UGGCCUGGGU--AGAG- -5'
7332 5' -57.5 NC_001900.1 + 3853 0.66 0.507989
Target:  5'- -gGCUGAUCGGCGCgGuGAacaCCGUCa- -3'
miRNA:   3'- caCGGCUAGUCGUGgC-CUg--GGUAGag -5'
7332 5' -57.5 NC_001900.1 + 14041 0.67 0.497582
Target:  5'- cGUGCCGAc--GUACCGGACUgGUUg- -3'
miRNA:   3'- -CACGGCUaguCGUGGCCUGGgUAGag -5'
7332 5' -57.5 NC_001900.1 + 10570 0.67 0.487271
Target:  5'- cGUGCC---CAGCagGCCGaGGCCCAUCg- -3'
miRNA:   3'- -CACGGcuaGUCG--UGGC-CUGGGUAGag -5'
7332 5' -57.5 NC_001900.1 + 43940 0.67 0.45697
Target:  5'- aUGCCGAagUGGCACCagucGGCCCAgccCUCg -3'
miRNA:   3'- cACGGCUa-GUCGUGGc---CUGGGUa--GAG- -5'
7332 5' -57.5 NC_001900.1 + 9031 0.68 0.447096
Target:  5'- cUGCCGA--AGCACCGGGuugCCGUCg- -3'
miRNA:   3'- cACGGCUagUCGUGGCCUg--GGUAGag -5'
7332 5' -57.5 NC_001900.1 + 39654 0.68 0.42771
Target:  5'- -aGCgCGAaCAGCACCGGGuuCAUC-Cg -3'
miRNA:   3'- caCG-GCUaGUCGUGGCCUggGUAGaG- -5'
7332 5' -57.5 NC_001900.1 + 7867 0.68 0.42771
Target:  5'- uUGCCGAUC---GCCuGACCgGUCUCa -3'
miRNA:   3'- cACGGCUAGucgUGGcCUGGgUAGAG- -5'
7332 5' -57.5 NC_001900.1 + 3134 0.68 0.418206
Target:  5'- -cGCCGGUCGGgucgGCgGGugCCcgCUCg -3'
miRNA:   3'- caCGGCUAGUCg---UGgCCugGGuaGAG- -5'
7332 5' -57.5 NC_001900.1 + 3912 0.7 0.322658
Target:  5'- -cGCCGAUCAGC-CCGGAgaagCCGUUg- -3'
miRNA:   3'- caCGGCUAGUCGuGGCCUg---GGUAGag -5'
7332 5' -57.5 NC_001900.1 + 10000 0.7 0.307137
Target:  5'- aUGCCGAagaUCAGuCGCUGGggcacGCCCAUCa- -3'
miRNA:   3'- cACGGCU---AGUC-GUGGCC-----UGGGUAGag -5'
7332 5' -57.5 NC_001900.1 + 23883 0.71 0.284937
Target:  5'- -cGCCGAU-AGCcgACCGGAgCCCGUCgUCg -3'
miRNA:   3'- caCGGCUAgUCG--UGGCCU-GGGUAG-AG- -5'
7332 5' -57.5 NC_001900.1 + 43877 0.71 0.277824
Target:  5'- gGUGCCacuUCGGCAugucugggaUCGGACCCAgCUCa -3'
miRNA:   3'- -CACGGcu-AGUCGU---------GGCCUGGGUaGAG- -5'
7332 5' -57.5 NC_001900.1 + 29427 0.73 0.208725
Target:  5'- gGUGCUGAUCGGCACC-GACCCc---- -3'
miRNA:   3'- -CACGGCUAGUCGUGGcCUGGGuagag -5'
7332 5' -57.5 NC_001900.1 + 29364 1.08 0.000568
Target:  5'- gGUGCCGAUCAGCACCGGACCCAUCUCc -3'
miRNA:   3'- -CACGGCUAGUCGUGGCCUGGGUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.