Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 31869 | 0.68 | 0.588781 |
|
Target: 5'- --gGUGCUUcuuCcGCAUCAGCGGCCu -3' miRNA: 3'- gaaCACGAGcauGcCGUGGUUGCCGG- -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 33227 | 0.66 | 0.732029 |
|
Target: 5'- --cGUGaCgcuggCGUAcuuCGGCACCAgccACGGCg -3' miRNA: 3'- gaaCAC-Ga----GCAU---GCCGUGGU---UGCCGg -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 36721 | 0.74 | 0.286423 |
|
Target: 5'- uCUUGUGCagGUACGGCAgcUUggUGGCUg -3' miRNA: 3'- -GAACACGagCAUGCCGU--GGuuGCCGG- -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 37215 | 0.67 | 0.655452 |
|
Target: 5'- aCUUGUGCagauagUCGaACGGC--CGGCGGUCg -3' miRNA: 3'- -GAACACG------AGCaUGCCGugGUUGCCGG- -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 39441 | 0.68 | 0.633206 |
|
Target: 5'- --gGUGCgug-GC-GCACCGugGGCCg -3' miRNA: 3'- gaaCACGagcaUGcCGUGGUugCCGG- -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 40831 | 0.66 | 0.753162 |
|
Target: 5'- -gUGgugGUUCacgGCGGCGCUcGCGGCg -3' miRNA: 3'- gaACa--CGAGca-UGCCGUGGuUGCCGg -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 43625 | 0.66 | 0.721302 |
|
Target: 5'- --cGU-CUCaUGCGGCGCguACGGCg -3' miRNA: 3'- gaaCAcGAGcAUGCCGUGguUGCCGg -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 44797 | 0.66 | 0.722379 |
|
Target: 5'- ----cGCUCGgaucgacaaggugugGCaGCgGCCAGCGGCCu -3' miRNA: 3'- gaacaCGAGCa--------------UGcCG-UGGUUGCCGG- -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 45645 | 0.67 | 0.698496 |
|
Target: 5'- --cGUGgaCGUucuucuugccuucACGGCGCaCAcgcucACGGCCg -3' miRNA: 3'- gaaCACgaGCA-------------UGCCGUG-GU-----UGCCGG- -5' |
|||||||
| 7336 | 3' | -54.4 | NC_001900.1 | + | 46455 | 0.67 | 0.677609 |
|
Target: 5'- aCUgcgGUGCcUGcUACaaCGCCAGCGGCCa -3' miRNA: 3'- -GAa--CACGaGC-AUGccGUGGUUGCCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home