miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7336 3' -54.4 NC_001900.1 + 30460 1.13 0.000624
Target:  5'- uCUUGUGCUCGUACGGCACCAACGGCCg -3'
miRNA:   3'- -GAACACGAGCAUGCCGUGGUUGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 36721 0.74 0.286423
Target:  5'- uCUUGUGCagGUACGGCAgcUUggUGGCUg -3'
miRNA:   3'- -GAACACGagCAUGCCGU--GGuuGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 4992 0.71 0.461015
Target:  5'- ---aUGCUCGUcgggcuccagcACGGCGgCGGgGGCCg -3'
miRNA:   3'- gaacACGAGCA-----------UGCCGUgGUUgCCGG- -5'
7336 3' -54.4 NC_001900.1 + 16987 0.7 0.471152
Target:  5'- -gUGUGgUCGcacuCGGCAUgGACGGCa -3'
miRNA:   3'- gaACACgAGCau--GCCGUGgUUGCCGg -5'
7336 3' -54.4 NC_001900.1 + 23500 0.69 0.530913
Target:  5'- ----cGCUCGUcguCGGCACCAuccccggugaggcuGCaGGCCu -3'
miRNA:   3'- gaacaCGAGCAu--GCCGUGGU--------------UG-CCGG- -5'
7336 3' -54.4 NC_001900.1 + 834 0.69 0.534139
Target:  5'- cCUUGcgacUGC-CaGUACGcgccGCACCAGCGGCUg -3'
miRNA:   3'- -GAAC----ACGaG-CAUGC----CGUGGUUGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 28201 0.69 0.544943
Target:  5'- cCUUGUGCgaugUCGU-UGGCcucguccuuGCgGACGGCCu -3'
miRNA:   3'- -GAACACG----AGCAuGCCG---------UGgUUGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 23237 0.69 0.566754
Target:  5'- ---cUGCUCGgcCGGCucaaCGACGGUCu -3'
miRNA:   3'- gaacACGAGCauGCCGug--GUUGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 31869 0.68 0.588781
Target:  5'- --gGUGCUUcuuCcGCAUCAGCGGCCu -3'
miRNA:   3'- gaaCACGAGcauGcCGUGGUUGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 28055 0.68 0.610956
Target:  5'- --cGUGCccgcCGgggGCGGCGUCAACGuGCCg -3'
miRNA:   3'- gaaCACGa---GCa--UGCCGUGGUUGC-CGG- -5'
7336 3' -54.4 NC_001900.1 + 17411 0.68 0.633206
Target:  5'- --cGUGUUCG-ACGGUGCCAugcaAgGGCUu -3'
miRNA:   3'- gaaCACGAGCaUGCCGUGGU----UgCCGG- -5'
7336 3' -54.4 NC_001900.1 + 39441 0.68 0.633206
Target:  5'- --gGUGCgug-GC-GCACCGugGGCCg -3'
miRNA:   3'- gaaCACGagcaUGcCGUGGUugCCGG- -5'
7336 3' -54.4 NC_001900.1 + 755 0.68 0.644335
Target:  5'- ----cGCUgGUGCGGCGCguACuGGCa -3'
miRNA:   3'- gaacaCGAgCAUGCCGUGguUG-CCGg -5'
7336 3' -54.4 NC_001900.1 + 1614 0.68 0.644335
Target:  5'- --gGUGCuUCGUGCGGUggACCAccuGC-GCCu -3'
miRNA:   3'- gaaCACG-AGCAUGCCG--UGGU---UGcCGG- -5'
7336 3' -54.4 NC_001900.1 + 37215 0.67 0.655452
Target:  5'- aCUUGUGCagauagUCGaACGGC--CGGCGGUCg -3'
miRNA:   3'- -GAACACG------AGCaUGCCGugGUUGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 31691 0.67 0.666547
Target:  5'- gCUUG-GCUCcgguCGGC-CCGAacCGGCCg -3'
miRNA:   3'- -GAACaCGAGcau-GCCGuGGUU--GCCGG- -5'
7336 3' -54.4 NC_001900.1 + 46455 0.67 0.677609
Target:  5'- aCUgcgGUGCcUGcUACaaCGCCAGCGGCCa -3'
miRNA:   3'- -GAa--CACGaGC-AUGccGUGGUUGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 27567 0.67 0.688627
Target:  5'- --gGUGCgcCGcUACauCGCCGACGGCCg -3'
miRNA:   3'- gaaCACGa-GC-AUGccGUGGUUGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 45645 0.67 0.698496
Target:  5'- --cGUGgaCGUucuucuugccuucACGGCGCaCAcgcucACGGCCg -3'
miRNA:   3'- gaaCACgaGCA-------------UGCCGUG-GU-----UGCCGG- -5'
7336 3' -54.4 NC_001900.1 + 1237 0.67 0.69959
Target:  5'- -gUGUaCUCGgugGCGGCGgCAGCGGa- -3'
miRNA:   3'- gaACAcGAGCa--UGCCGUgGUUGCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.