miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7336 5' -62.3 NC_001900.1 + 12552 0.66 0.332271
Target:  5'- aCGGGCugU--CGGUGCC-GUGCAUc -3'
miRNA:   3'- aGCCCGugGucGCCACGGuCGCGUGa -5'
7336 5' -62.3 NC_001900.1 + 20500 0.66 0.332271
Target:  5'- uUCGGGCcgGCCaAGUGGUGCUuGCugguCACg -3'
miRNA:   3'- -AGCCCG--UGG-UCGCCACGGuCGc---GUGa -5'
7336 5' -62.3 NC_001900.1 + 39893 0.66 0.329923
Target:  5'- aUCGcGuGCAgCAGCGGUGUcgugucggcuucauCAGCGCGa- -3'
miRNA:   3'- -AGC-C-CGUgGUCGCCACG--------------GUCGCGUga -5'
7336 5' -62.3 NC_001900.1 + 21949 0.66 0.316851
Target:  5'- cCGGcGUACUGGCGGauugGUCAGaGCACUu -3'
miRNA:   3'- aGCC-CGUGGUCGCCa---CGGUCgCGUGA- -5'
7336 5' -62.3 NC_001900.1 + 21054 0.66 0.309346
Target:  5'- cUGGGCACCAGCccgaGG-GCUc-CGCACg -3'
miRNA:   3'- aGCCCGUGGUCG----CCaCGGucGCGUGa -5'
7336 5' -62.3 NC_001900.1 + 1224 0.67 0.283454
Target:  5'- gCaGGCACCGGUGGUGUacucgguggcggcggCAGCGgaGCUg -3'
miRNA:   3'- aGcCCGUGGUCGCCACG---------------GUCGCg-UGA- -5'
7336 5' -62.3 NC_001900.1 + 25553 0.67 0.273858
Target:  5'- cCGGGCcgugggagccacGCUGGCGGcucagGCCGGUGCGa- -3'
miRNA:   3'- aGCCCG------------UGGUCGCCa----CGGUCGCGUga -5'
7336 5' -62.3 NC_001900.1 + 33369 0.67 0.254174
Target:  5'- gUCGGcgucugcugcuGCGCUucuucagcaggAGCGGUGucgaCCGGCGCGCUg -3'
miRNA:   3'- -AGCC-----------CGUGG-----------UCGCCAC----GGUCGCGUGA- -5'
7336 5' -62.3 NC_001900.1 + 40426 0.68 0.247875
Target:  5'- -aGGaaCACCAGCGGggcGCCGGUGC-CUa -3'
miRNA:   3'- agCCc-GUGGUCGCCa--CGGUCGCGuGA- -5'
7336 5' -62.3 NC_001900.1 + 19874 0.68 0.235667
Target:  5'- gUCGGGCuCCc-CGGUGUgGGCGCGg- -3'
miRNA:   3'- -AGCCCGuGGucGCCACGgUCGCGUga -5'
7336 5' -62.3 NC_001900.1 + 4998 0.68 0.229754
Target:  5'- gUCGGGCuCCagcacggcGGCGGggGCCGGUacucGCACa -3'
miRNA:   3'- -AGCCCGuGG--------UCGCCa-CGGUCG----CGUGa -5'
7336 5' -62.3 NC_001900.1 + 12240 0.69 0.212216
Target:  5'- aUGGGUACCA-CGG-GCCAGaagauccCGCACUg -3'
miRNA:   3'- aGCCCGUGGUcGCCaCGGUC-------GCGUGA- -5'
7336 5' -62.3 NC_001900.1 + 48567 0.7 0.163758
Target:  5'- -aGGGCACguGUGGcagGCCAGaCGCAa- -3'
miRNA:   3'- agCCCGUGguCGCCa--CGGUC-GCGUga -5'
7336 5' -62.3 NC_001900.1 + 33127 0.71 0.135743
Target:  5'- gCGGuaGCGgCGGCGGUgGCCAGCaGCACc -3'
miRNA:   3'- aGCC--CGUgGUCGCCA-CGGUCG-CGUGa -5'
7336 5' -62.3 NC_001900.1 + 4000 0.72 0.112196
Target:  5'- gCGGGUACCGGCGucucgGCCAGCuCGCc -3'
miRNA:   3'- aGCCCGUGGUCGCca---CGGUCGcGUGa -5'
7336 5' -62.3 NC_001900.1 + 41281 0.73 0.092514
Target:  5'- cCGcuGCACCAGCaGGUGCUGGgCGCGCUg -3'
miRNA:   3'- aGCc-CGUGGUCG-CCACGGUC-GCGUGA- -5'
7336 5' -62.3 NC_001900.1 + 12616 0.76 0.064342
Target:  5'- gUCGuGGCACCGGUGGUGUCAGCa---- -3'
miRNA:   3'- -AGC-CCGUGGUCGCCACGGUCGcguga -5'
7336 5' -62.3 NC_001900.1 + 30494 1.08 0.000198
Target:  5'- gUCGGGCACCAGCGGUGCCAGCGCACUg -3'
miRNA:   3'- -AGCCCGUGGUCGCCACGGUCGCGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.