miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7337 3' -54.1 NC_001900.1 + 36757 0.66 0.771993
Target:  5'- cGGCGGAUcaGCUcCAgCG-AGGUCCGUg -3'
miRNA:   3'- -CUGCUUG--CGAaGUgGCuUCCAGGCGg -5'
7337 3' -54.1 NC_001900.1 + 11864 0.66 0.782081
Target:  5'- gGGCGAggACGCcgacucgaUCGCCGA--GUCCGCg -3'
miRNA:   3'- -CUGCU--UGCGa-------AGUGGCUucCAGGCGg -5'
7337 3' -54.1 NC_001900.1 + 17169 0.66 0.75139
Target:  5'- -gUGAACaucgccaaggGCUUCACCGAcguggugucgcaGGGUCCGg- -3'
miRNA:   3'- cuGCUUG----------CGAAGUGGCU------------UCCAGGCgg -5'
7337 3' -54.1 NC_001900.1 + 21560 0.66 0.740898
Target:  5'- uGCGAugGCcgcgaaCGCCGAgaGGGUgaaCGCCu -3'
miRNA:   3'- cUGCUugCGaa----GUGGCU--UCCAg--GCGG- -5'
7337 3' -54.1 NC_001900.1 + 1398 0.66 0.771993
Target:  5'- -cCGcACGCUUCugCGcGGGGUCCaucggGCUg -3'
miRNA:   3'- cuGCuUGCGAAGugGC-UUCCAGG-----CGG- -5'
7337 3' -54.1 NC_001900.1 + 4235 0.66 0.757627
Target:  5'- aGACG-ACGCgaguuguuuggggUCACCGccGG-CCGCUu -3'
miRNA:   3'- -CUGCuUGCGa------------AGUGGCuuCCaGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 13818 0.67 0.719591
Target:  5'- -gUGGACGCaguagCagACCGGAGGaUCCGCUu -3'
miRNA:   3'- cuGCUUGCGaa---G--UGGCUUCC-AGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 29840 0.67 0.697932
Target:  5'- aGGC-AGCGCgagcugUCAUCagguGGAGGUCCGCa -3'
miRNA:   3'- -CUGcUUGCGa-----AGUGG----CUUCCAGGCGg -5'
7337 3' -54.1 NC_001900.1 + 5020 0.67 0.708799
Target:  5'- -cCGcAACGCcUC-CCGGAGGgagUCGCCu -3'
miRNA:   3'- cuGC-UUGCGaAGuGGCUUCCa--GGCGG- -5'
7337 3' -54.1 NC_001900.1 + 43572 0.67 0.702287
Target:  5'- cGAUGGACGCggagcaggcggcgCACCGAGcuGGcCgGCCg -3'
miRNA:   3'- -CUGCUUGCGaa-----------GUGGCUU--CCaGgCGG- -5'
7337 3' -54.1 NC_001900.1 + 37631 0.68 0.639519
Target:  5'- cGACGGuuucaagcucgaccACGCcaagaUCuCCGAGGGUCCGUUc -3'
miRNA:   3'- -CUGCU--------------UGCGa----AGuGGCUUCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 17935 0.68 0.676013
Target:  5'- -cCGAACGCUUCcCCGAucuggggcAGGUacggGCCg -3'
miRNA:   3'- cuGCUUGCGAAGuGGCU--------UCCAgg--CGG- -5'
7337 3' -54.1 NC_001900.1 + 17497 0.68 0.676013
Target:  5'- aGGCGAugGg-UCAgcUCGguGGUCCGCUg -3'
miRNA:   3'- -CUGCUugCgaAGU--GGCuuCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 43308 0.68 0.653925
Target:  5'- aGACGuugcucACGCUggcucccucacgUCggGCCGAccguGGGUCUGCCa -3'
miRNA:   3'- -CUGCu-----UGCGA------------AG--UGGCU----UCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 35151 0.68 0.664985
Target:  5'- cGACGAcuACGCUgaccUgGCCGAggcGGGUCaguugucgaGCCg -3'
miRNA:   3'- -CUGCU--UGCGA----AgUGGCU---UCCAGg--------CGG- -5'
7337 3' -54.1 NC_001900.1 + 31725 0.69 0.576505
Target:  5'- aGGCGGAC-CUUCGgUGAAGcGUUCGUCa -3'
miRNA:   3'- -CUGCUUGcGAAGUgGCUUC-CAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 18149 0.7 0.511802
Target:  5'- uGCGucgGCGCagUCGCCGAguGGGUCgGCUc -3'
miRNA:   3'- cUGCu--UGCGa-AGUGGCU--UCCAGgCGG- -5'
7337 3' -54.1 NC_001900.1 + 3023 0.71 0.490882
Target:  5'- -cCGAAgGCg--ACCGGcgacGGGUCCGCCu -3'
miRNA:   3'- cuGCUUgCGaagUGGCU----UCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 22511 0.71 0.490882
Target:  5'- cGCGAACGCaUCGCUGGugacgaaaagAGGUgCGCUu -3'
miRNA:   3'- cUGCUUGCGaAGUGGCU----------UCCAgGCGG- -5'
7337 3' -54.1 NC_001900.1 + 1702 0.71 0.450299
Target:  5'- --aGAGCGCgcUgACCGggGGUgUCGCCa -3'
miRNA:   3'- cugCUUGCGa-AgUGGCuuCCA-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.