miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7337 3' -54.1 NC_001900.1 + 11864 0.66 0.782081
Target:  5'- gGGCGAggACGCcgacucgaUCGCCGA--GUCCGCg -3'
miRNA:   3'- -CUGCU--UGCGa-------AGUGGCUucCAGGCGg -5'
7337 3' -54.1 NC_001900.1 + 17169 0.66 0.75139
Target:  5'- -gUGAACaucgccaaggGCUUCACCGAcguggugucgcaGGGUCCGg- -3'
miRNA:   3'- cuGCUUG----------CGAAGUGGCU------------UCCAGGCgg -5'
7337 3' -54.1 NC_001900.1 + 29840 0.67 0.697932
Target:  5'- aGGC-AGCGCgagcugUCAUCagguGGAGGUCCGCa -3'
miRNA:   3'- -CUGcUUGCGa-----AGUGG----CUUCCAGGCGg -5'
7337 3' -54.1 NC_001900.1 + 17497 0.68 0.676013
Target:  5'- aGGCGAugGg-UCAgcUCGguGGUCCGCUg -3'
miRNA:   3'- -CUGCUugCgaAGU--GGCuuCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 43308 0.68 0.653925
Target:  5'- aGACGuugcucACGCUggcucccucacgUCggGCCGAccguGGGUCUGCCa -3'
miRNA:   3'- -CUGCu-----UGCGA------------AG--UGGCU----UCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 18149 0.7 0.511802
Target:  5'- uGCGucgGCGCagUCGCCGAguGGGUCgGCUc -3'
miRNA:   3'- cUGCu--UGCGa-AGUGGCU--UCCAGgCGG- -5'
7337 3' -54.1 NC_001900.1 + 22511 0.71 0.490882
Target:  5'- cGCGAACGCaUCGCUGGugacgaaaagAGGUgCGCUu -3'
miRNA:   3'- cUGCUUGCGaAGUGGCU----------UCCAgGCGG- -5'
7337 3' -54.1 NC_001900.1 + 3023 0.71 0.490882
Target:  5'- -cCGAAgGCg--ACCGGcgacGGGUCCGCCu -3'
miRNA:   3'- cuGCUUgCGaagUGGCU----UCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 11615 0.72 0.434588
Target:  5'- cGACGAGgcauacgucaaggaGCUUCGCCaGGAGG-CCGCUg -3'
miRNA:   3'- -CUGCUUg-------------CGAAGUGG-CUUCCaGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 26385 0.72 0.421105
Target:  5'- uGACGuacGACGCUUgCACuCGAccgcugcgcuGGGUCCGCa -3'
miRNA:   3'- -CUGC---UUGCGAA-GUG-GCU----------UCCAGGCGg -5'
7337 3' -54.1 NC_001900.1 + 46569 0.76 0.23909
Target:  5'- uGGCGAugGCUuggugggcagccUCACgGAAGGUCaGCCc -3'
miRNA:   3'- -CUGCUugCGA------------AGUGgCUUCCAGgCGG- -5'
7337 3' -54.1 NC_001900.1 + 22815 0.82 0.098886
Target:  5'- cAUGGACGCgcUCAgCGAAGGUCCGCUg -3'
miRNA:   3'- cUGCUUGCGa-AGUgGCUUCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 31650 1.12 0.000862
Target:  5'- uGACGAACGCUUCACCGAAGGUCCGCCu -3'
miRNA:   3'- -CUGCUUGCGAAGUGGCUUCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 47681 0.78 0.193202
Target:  5'- --aGAACGCU---CCGAAGGUUCGCCa -3'
miRNA:   3'- cugCUUGCGAaguGGCUUCCAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 1398 0.66 0.771993
Target:  5'- -cCGcACGCUUCugCGcGGGGUCCaucggGCUg -3'
miRNA:   3'- cuGCuUGCGAAGugGC-UUCCAGG-----CGG- -5'
7337 3' -54.1 NC_001900.1 + 3310 0.72 0.402289
Target:  5'- -uCGAACGggUUGCCG-AGGUCgGCCa -3'
miRNA:   3'- cuGCUUGCgaAGUGGCuUCCAGgCGG- -5'
7337 3' -54.1 NC_001900.1 + 1702 0.71 0.450299
Target:  5'- --aGAGCGCgcUgACCGggGGUgUCGCCa -3'
miRNA:   3'- cugCUUGCGa-AgUGGCuuCCA-GGCGG- -5'
7337 3' -54.1 NC_001900.1 + 29104 0.71 0.487778
Target:  5'- aGACGAGaucggcgucuacacCGCcgaugUCcCCGAAGGUCgGCCu -3'
miRNA:   3'- -CUGCUU--------------GCGa----AGuGGCUUCCAGgCGG- -5'
7337 3' -54.1 NC_001900.1 + 31725 0.69 0.576505
Target:  5'- aGGCGGAC-CUUCGgUGAAGcGUUCGUCa -3'
miRNA:   3'- -CUGCUUGcGAAGUgGCUUC-CAGGCGG- -5'
7337 3' -54.1 NC_001900.1 + 37631 0.68 0.639519
Target:  5'- cGACGGuuucaagcucgaccACGCcaagaUCuCCGAGGGUCCGUUc -3'
miRNA:   3'- -CUGCU--------------UGCGa----AGuGGCUUCCAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.