miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7338 5' -54.7 NC_001900.1 + 20377 0.67 0.688864
Target:  5'- aGCUGCccugguACAUCGCCGAGGAGggCAu- -3'
miRNA:   3'- -CGACGc-----UGUGGUGGCUCUUCgaGUcc -5'
7338 5' -54.7 NC_001900.1 + 9071 0.73 0.334182
Target:  5'- cCUGCGAgaUACCGgCGAGAAGCUgAGc -3'
miRNA:   3'- cGACGCU--GUGGUgGCUCUUCGAgUCc -5'
7338 5' -54.7 NC_001900.1 + 8995 0.73 0.350791
Target:  5'- cGCUgGCGuuccgaGCUGCCaAGAAGCUCGGGg -3'
miRNA:   3'- -CGA-CGCug----UGGUGGcUCUUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 9633 0.72 0.376786
Target:  5'- cGgUGCGccacGCACCACCG-GGAGUUCaAGGc -3'
miRNA:   3'- -CgACGC----UGUGGUGGCuCUUCGAG-UCC- -5'
7338 5' -54.7 NC_001900.1 + 22015 0.67 0.688864
Target:  5'- aGCgcccagGCG-UACCaACCGuGucGGCUCAGGg -3'
miRNA:   3'- -CGa-----CGCuGUGG-UGGCuCu-UCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 24252 0.67 0.677894
Target:  5'- gGCaGCGAugagcgugcCACCGcCCGAGAagguGGCUguGGu -3'
miRNA:   3'- -CGaCGCU---------GUGGU-GGCUCU----UCGAguCC- -5'
7338 5' -54.7 NC_001900.1 + 48356 0.67 0.664673
Target:  5'- cGCUGCGGCccguggcaugucCCGCC-AGAGGCugaaaUCGGGc -3'
miRNA:   3'- -CGACGCUGu-----------GGUGGcUCUUCG-----AGUCC- -5'
7338 5' -54.7 NC_001900.1 + 20829 0.67 0.655833
Target:  5'- aCUGCacGACGCUACCGAcGAGGCcguccgcaAGGa -3'
miRNA:   3'- cGACG--CUGUGGUGGCU-CUUCGag------UCC- -5'
7338 5' -54.7 NC_001900.1 + 14826 0.67 0.655833
Target:  5'- --aGCGGuCGCUgauccgaagaGCCGAGAGGUUCuGGa -3'
miRNA:   3'- cgaCGCU-GUGG----------UGGCUCUUCGAGuCC- -5'
7338 5' -54.7 NC_001900.1 + 47531 0.68 0.633684
Target:  5'- -gUGCGGuggacCACCugCGccuGGCUCAGGa -3'
miRNA:   3'- cgACGCU-----GUGGugGCucuUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 20744 0.68 0.611527
Target:  5'- aGCUGUGGCucggcucauuCCACCGGGAg---CAGGa -3'
miRNA:   3'- -CGACGCUGu---------GGUGGCUCUucgaGUCC- -5'
7338 5' -54.7 NC_001900.1 + 31881 0.68 0.600472
Target:  5'- cCUGCGACACCACguCGGuGAAGCcCuuGGc -3'
miRNA:   3'- cGACGCUGUGGUG--GCU-CUUCGaGu-CC- -5'
7338 5' -54.7 NC_001900.1 + 45320 0.68 0.589443
Target:  5'- cGCcGCGAgguCACCuugaGCUG-GAAGUUCAGGg -3'
miRNA:   3'- -CGaCGCU---GUGG----UGGCuCUUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 19949 0.68 0.589443
Target:  5'- uGCUGCccGCACgaacgggaagcuCACCGAGGAGCUgAuGGg -3'
miRNA:   3'- -CGACGc-UGUG------------GUGGCUCUUCGAgU-CC- -5'
7338 5' -54.7 NC_001900.1 + 30923 0.69 0.556611
Target:  5'- --gGCGACugCGCCGAcGAGucuGC-CAGGa -3'
miRNA:   3'- cgaCGCUGugGUGGCU-CUU---CGaGUCC- -5'
7338 5' -54.7 NC_001900.1 + 32286 0.69 0.55227
Target:  5'- aCUGCucagucccuucuUACCGCCGAGcaggcGGCUCAGGa -3'
miRNA:   3'- cGACGcu----------GUGGUGGCUCu----UCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 36140 0.7 0.472242
Target:  5'- aCUGCGACgagguugugcuGCCACagCGAGAcgaAGUUCGGGc -3'
miRNA:   3'- cGACGCUG-----------UGGUG--GCUCU---UCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 18880 0.7 0.469198
Target:  5'- cGCUGCGGgaggcgagaaagcuCACCugGCCGAGAuGGUcCAGGa -3'
miRNA:   3'- -CGACGCU--------------GUGG--UGGCUCU-UCGaGUCC- -5'
7338 5' -54.7 NC_001900.1 + 4942 0.7 0.462136
Target:  5'- cGC-GUGAagcCAUCACCGAGGAGUUCcacAGGg -3'
miRNA:   3'- -CGaCGCU---GUGGUGGCUCUUCGAG---UCC- -5'
7338 5' -54.7 NC_001900.1 + 14981 0.72 0.385735
Target:  5'- cGCUGagguCGACagaGCgGCCGAGGAGUUCAGc -3'
miRNA:   3'- -CGAC----GCUG---UGgUGGCUCUUCGAGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.