miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7338 5' -54.7 NC_001900.1 + 32487 1.12 0.000607
Target:  5'- cGCUGCGACACCACCGAGAAGCUCAGGu -3'
miRNA:   3'- -CGACGCUGUGGUGGCUCUUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 32891 0.68 0.622601
Target:  5'- aCUGCGcgggGCACUGCucguugCGAGGAGCggugCAGGa -3'
miRNA:   3'- cGACGC----UGUGGUG------GCUCUUCGa---GUCC- -5'
7338 5' -54.7 NC_001900.1 + 18883 0.68 0.600472
Target:  5'- cGgUGCGAucuccaaggcCAUCACCGAGggGaUUCAGu -3'
miRNA:   3'- -CgACGCU----------GUGGUGGCUCuuC-GAGUCc -5'
7338 5' -54.7 NC_001900.1 + 3530 0.68 0.589443
Target:  5'- ----gGACGCCAUCGAcgcGgcGCUCGGGg -3'
miRNA:   3'- cgacgCUGUGGUGGCU---CuuCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 10363 0.7 0.51372
Target:  5'- cGCgaagGCuGACGCCGCCacGAAGCUCuauGGc -3'
miRNA:   3'- -CGa---CG-CUGUGGUGGcuCUUCGAGu--CC- -5'
7338 5' -54.7 NC_001900.1 + 1173 0.7 0.503203
Target:  5'- gGCgGCGGuggaGCCGCCG-GAAGCggcCGGGg -3'
miRNA:   3'- -CGaCGCUg---UGGUGGCuCUUCGa--GUCC- -5'
7338 5' -54.7 NC_001900.1 + 8330 0.66 0.742655
Target:  5'- --cGgGAgGgCAUCGAGAAGCUCcgcgAGGg -3'
miRNA:   3'- cgaCgCUgUgGUGGCUCUUCGAG----UCC- -5'
7338 5' -54.7 NC_001900.1 + 44723 0.66 0.732077
Target:  5'- cGCUGCcACACCuugucgauCCGAGcGAGCuuguacgccaUCGGGc -3'
miRNA:   3'- -CGACGcUGUGGu-------GGCUC-UUCG----------AGUCC- -5'
7338 5' -54.7 NC_001900.1 + 28036 0.67 0.655833
Target:  5'- gGgUGCGGagcCGCCACCGucacaggccguGAGGCcCAGGg -3'
miRNA:   3'- -CgACGCU---GUGGUGGCu----------CUUCGaGUCC- -5'
7338 5' -54.7 NC_001900.1 + 23500 0.68 0.622601
Target:  5'- cGCUcgucGuCGGCACCAuccCCGGuGAGGCUgCAGGc -3'
miRNA:   3'- -CGA----C-GCUGUGGU---GGCU-CUUCGA-GUCC- -5'
7338 5' -54.7 NC_001900.1 + 38398 0.69 0.535014
Target:  5'- cGUUGCGAUAC--CCGAGGaacAGCUCGcGGa -3'
miRNA:   3'- -CGACGCUGUGguGGCUCU---UCGAGU-CC- -5'
7338 5' -54.7 NC_001900.1 + 37340 0.75 0.266655
Target:  5'- cGCUGggcgaacuccucCGACGaacccuugguCCACCGAGAcgGGCUCGGGu -3'
miRNA:   3'- -CGAC------------GCUGU----------GGUGGCUCU--UCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 11732 0.67 0.655833
Target:  5'- uGCUcGCGACACucgaauCACCGAGcuggagaacGAGCUgggaCAGGc -3'
miRNA:   3'- -CGA-CGCUGUG------GUGGCUC---------UUCGA----GUCC- -5'
7338 5' -54.7 NC_001900.1 + 4809 0.72 0.376786
Target:  5'- ----aGACACCACCGAcu-GCUCGGGu -3'
miRNA:   3'- cgacgCUGUGGUGGCUcuuCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 22880 0.68 0.600472
Target:  5'- gGCUGCuGACcgaACC-CgGAGAGGUcaUCGGGg -3'
miRNA:   3'- -CGACG-CUG---UGGuGgCUCUUCG--AGUCC- -5'
7338 5' -54.7 NC_001900.1 + 47974 0.66 0.732077
Target:  5'- uGCcGCGAUACCA-----AAGCUCAGGu -3'
miRNA:   3'- -CGaCGCUGUGGUggcucUUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 2463 0.72 0.376786
Target:  5'- gGCUGCGuccggGCuGCCACCGAcguagaccacaaGAAGC-CAGGg -3'
miRNA:   3'- -CGACGC-----UG-UGGUGGCU------------CUUCGaGUCC- -5'
7338 5' -54.7 NC_001900.1 + 33536 0.67 0.654727
Target:  5'- uGCUGCuugguGAUucgcucguagggaGCCugCGGGAAGCUCuccuccGGGa -3'
miRNA:   3'- -CGACG-----CUG-------------UGGugGCUCUUCGAG------UCC- -5'
7338 5' -54.7 NC_001900.1 + 19949 0.68 0.589443
Target:  5'- uGCUGCccGCACgaacgggaagcuCACCGAGGAGCUgAuGGg -3'
miRNA:   3'- -CGACGc-UGUG------------GUGGCUCUUCGAgU-CC- -5'
7338 5' -54.7 NC_001900.1 + 45320 0.68 0.589443
Target:  5'- cGCcGCGAgguCACCuugaGCUG-GAAGUUCAGGg -3'
miRNA:   3'- -CGaCGCU---GUGG----UGGCuCUUCGAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.