Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7338 | 5' | -54.7 | NC_001900.1 | + | 32487 | 1.12 | 0.000607 |
Target: 5'- cGCUGCGACACCACCGAGAAGCUCAGGu -3' miRNA: 3'- -CGACGCUGUGGUGGCUCUUCGAGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 37340 | 0.75 | 0.266655 |
Target: 5'- cGCUGggcgaacuccucCGACGaacccuugguCCACCGAGAcgGGCUCGGGu -3' miRNA: 3'- -CGAC------------GCUGU----------GGUGGCUCU--UCGAGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 40203 | 0.74 | 0.280646 |
Target: 5'- cGCaUGuCGaACGCCACCGGGuuGUUCGGGc -3' miRNA: 3'- -CG-AC-GC-UGUGGUGGCUCuuCGAGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 8332 | 0.74 | 0.310363 |
Target: 5'- cGCUGaCGACAUCGCUGAccgcuGGGCUUGGGg -3' miRNA: 3'- -CGAC-GCUGUGGUGGCUc----UUCGAGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 9071 | 0.73 | 0.334182 |
Target: 5'- cCUGCGAgaUACCGgCGAGAAGCUgAGc -3' miRNA: 3'- cGACGCU--GUGGUgGCUCUUCGAgUCc -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 8995 | 0.73 | 0.350791 |
Target: 5'- cGCUgGCGuuccgaGCUGCCaAGAAGCUCGGGg -3' miRNA: 3'- -CGA-CGCug----UGGUGGcUCUUCGAGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 2463 | 0.72 | 0.376786 |
Target: 5'- gGCUGCGuccggGCuGCCACCGAcguagaccacaaGAAGC-CAGGg -3' miRNA: 3'- -CGACGC-----UG-UGGUGGCU------------CUUCGaGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 4809 | 0.72 | 0.376786 |
Target: 5'- ----aGACACCACCGAcu-GCUCGGGu -3' miRNA: 3'- cgacgCUGUGGUGGCUcuuCGAGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 9633 | 0.72 | 0.376786 |
Target: 5'- cGgUGCGccacGCACCACCG-GGAGUUCaAGGc -3' miRNA: 3'- -CgACGC----UGUGGUGGCuCUUCGAG-UCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 14981 | 0.72 | 0.385735 |
Target: 5'- cGCUGagguCGACagaGCgGCCGAGGAGUUCAGc -3' miRNA: 3'- -CGAC----GCUG---UGgUGGCUCUUCGAGUCc -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 4942 | 0.7 | 0.462136 |
Target: 5'- cGC-GUGAagcCAUCACCGAGGAGUUCcacAGGg -3' miRNA: 3'- -CGaCGCU---GUGGUGGCUCUUCGAG---UCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 18880 | 0.7 | 0.469198 |
Target: 5'- cGCUGCGGgaggcgagaaagcuCACCugGCCGAGAuGGUcCAGGa -3' miRNA: 3'- -CGACGCU--------------GUGG--UGGCUCU-UCGaGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 36140 | 0.7 | 0.472242 |
Target: 5'- aCUGCGACgagguugugcuGCCACagCGAGAcgaAGUUCGGGc -3' miRNA: 3'- cGACGCUG-----------UGGUG--GCUCU---UCGAGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 1173 | 0.7 | 0.503203 |
Target: 5'- gGCgGCGGuggaGCCGCCG-GAAGCggcCGGGg -3' miRNA: 3'- -CGaCGCUg---UGGUGGCuCUUCGa--GUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 10363 | 0.7 | 0.51372 |
Target: 5'- cGCgaagGCuGACGCCGCCacGAAGCUCuauGGc -3' miRNA: 3'- -CGa---CG-CUGUGGUGGcuCUUCGAGu--CC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 38398 | 0.69 | 0.535014 |
Target: 5'- cGUUGCGAUAC--CCGAGGaacAGCUCGcGGa -3' miRNA: 3'- -CGACGCUGUGguGGCUCU---UCGAGU-CC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 32286 | 0.69 | 0.55227 |
Target: 5'- aCUGCucagucccuucuUACCGCCGAGcaggcGGCUCAGGa -3' miRNA: 3'- cGACGcu----------GUGGUGGCUCu----UCGAGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 30923 | 0.69 | 0.556611 |
Target: 5'- --gGCGACugCGCCGAcGAGucuGC-CAGGa -3' miRNA: 3'- cgaCGCUGugGUGGCU-CUU---CGaGUCC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 19949 | 0.68 | 0.589443 |
Target: 5'- uGCUGCccGCACgaacgggaagcuCACCGAGGAGCUgAuGGg -3' miRNA: 3'- -CGACGc-UGUG------------GUGGCUCUUCGAgU-CC- -5' |
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7338 | 5' | -54.7 | NC_001900.1 | + | 45320 | 0.68 | 0.589443 |
Target: 5'- cGCcGCGAgguCACCuugaGCUG-GAAGUUCAGGg -3' miRNA: 3'- -CGaCGCU---GUGG----UGGCuCUUCGAGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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