miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7338 5' -54.7 NC_001900.1 + 1173 0.7 0.503203
Target:  5'- gGCgGCGGuggaGCCGCCG-GAAGCggcCGGGg -3'
miRNA:   3'- -CGaCGCUg---UGGUGGCuCUUCGa--GUCC- -5'
7338 5' -54.7 NC_001900.1 + 2463 0.72 0.376786
Target:  5'- gGCUGCGuccggGCuGCCACCGAcguagaccacaaGAAGC-CAGGg -3'
miRNA:   3'- -CGACGC-----UG-UGGUGGCU------------CUUCGaGUCC- -5'
7338 5' -54.7 NC_001900.1 + 3530 0.68 0.589443
Target:  5'- ----gGACGCCAUCGAcgcGgcGCUCGGGg -3'
miRNA:   3'- cgacgCUGUGGUGGCU---CuuCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 4809 0.72 0.376786
Target:  5'- ----aGACACCACCGAcu-GCUCGGGu -3'
miRNA:   3'- cgacgCUGUGGUGGCUcuuCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 4942 0.7 0.462136
Target:  5'- cGC-GUGAagcCAUCACCGAGGAGUUCcacAGGg -3'
miRNA:   3'- -CGaCGCU---GUGGUGGCUCUUCGAG---UCC- -5'
7338 5' -54.7 NC_001900.1 + 8330 0.66 0.742655
Target:  5'- --cGgGAgGgCAUCGAGAAGCUCcgcgAGGg -3'
miRNA:   3'- cgaCgCUgUgGUGGCUCUUCGAG----UCC- -5'
7338 5' -54.7 NC_001900.1 + 8332 0.74 0.310363
Target:  5'- cGCUGaCGACAUCGCUGAccgcuGGGCUUGGGg -3'
miRNA:   3'- -CGAC-GCUGUGGUGGCUc----UUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 8995 0.73 0.350791
Target:  5'- cGCUgGCGuuccgaGCUGCCaAGAAGCUCGGGg -3'
miRNA:   3'- -CGA-CGCug----UGGUGGcUCUUCGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 9071 0.73 0.334182
Target:  5'- cCUGCGAgaUACCGgCGAGAAGCUgAGc -3'
miRNA:   3'- cGACGCU--GUGGUgGCUCUUCGAgUCc -5'
7338 5' -54.7 NC_001900.1 + 9633 0.72 0.376786
Target:  5'- cGgUGCGccacGCACCACCG-GGAGUUCaAGGc -3'
miRNA:   3'- -CgACGC----UGUGGUGGCuCUUCGAG-UCC- -5'
7338 5' -54.7 NC_001900.1 + 10363 0.7 0.51372
Target:  5'- cGCgaagGCuGACGCCGCCacGAAGCUCuauGGc -3'
miRNA:   3'- -CGa---CG-CUGUGGUGGcuCUUCGAGu--CC- -5'
7338 5' -54.7 NC_001900.1 + 11732 0.67 0.655833
Target:  5'- uGCUcGCGACACucgaauCACCGAGcuggagaacGAGCUgggaCAGGc -3'
miRNA:   3'- -CGA-CGCUGUG------GUGGCUC---------UUCGA----GUCC- -5'
7338 5' -54.7 NC_001900.1 + 13114 0.65 0.749993
Target:  5'- gGCUgcGCGACgaguaccucuacgaGCCGCCGAucccGGAGUUCcuGGGa -3'
miRNA:   3'- -CGA--CGCUG--------------UGGUGGCU----CUUCGAG--UCC- -5'
7338 5' -54.7 NC_001900.1 + 14826 0.67 0.655833
Target:  5'- --aGCGGuCGCUgauccgaagaGCCGAGAGGUUCuGGa -3'
miRNA:   3'- cgaCGCU-GUGG----------UGGCUCUUCGAGuCC- -5'
7338 5' -54.7 NC_001900.1 + 14981 0.72 0.385735
Target:  5'- cGCUGagguCGACagaGCgGCCGAGGAGUUCAGc -3'
miRNA:   3'- -CGAC----GCUG---UGgUGGCUCUUCGAGUCc -5'
7338 5' -54.7 NC_001900.1 + 17228 0.65 0.752079
Target:  5'- --aGCGaACACCAagcucgcCCGAGAc-CUCGGGg -3'
miRNA:   3'- cgaCGC-UGUGGU-------GGCUCUucGAGUCC- -5'
7338 5' -54.7 NC_001900.1 + 18880 0.7 0.469198
Target:  5'- cGCUGCGGgaggcgagaaagcuCACCugGCCGAGAuGGUcCAGGa -3'
miRNA:   3'- -CGACGCU--------------GUGG--UGGCUCU-UCGaGUCC- -5'
7338 5' -54.7 NC_001900.1 + 18883 0.68 0.600472
Target:  5'- cGgUGCGAucuccaaggcCAUCACCGAGggGaUUCAGu -3'
miRNA:   3'- -CgACGCU----------GUGGUGGCUCuuC-GAGUCc -5'
7338 5' -54.7 NC_001900.1 + 19949 0.68 0.589443
Target:  5'- uGCUGCccGCACgaacgggaagcuCACCGAGGAGCUgAuGGg -3'
miRNA:   3'- -CGACGc-UGUG------------GUGGCUCUUCGAgU-CC- -5'
7338 5' -54.7 NC_001900.1 + 20377 0.67 0.688864
Target:  5'- aGCUGCccugguACAUCGCCGAGGAGggCAu- -3'
miRNA:   3'- -CGACGc-----UGUGGUGGCUCUUCgaGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.