miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7344 5' -64.6 NC_001900.1 + 35180 1.03 0.000258
Target:  5'- gUUCGCCCCGACGCCACCGCCCUCCAUg -3'
miRNA:   3'- -AAGCGGGGCUGCGGUGGCGGGAGGUA- -5'
7344 5' -64.6 NC_001900.1 + 7283 0.71 0.095622
Target:  5'- aUCGCCaCCG-CaGCCAUCGCCCUCg-- -3'
miRNA:   3'- aAGCGG-GGCuG-CGGUGGCGGGAGgua -5'
7344 5' -64.6 NC_001900.1 + 47882 0.71 0.095622
Target:  5'- -cCGCCCCGGCcgcuuccggcgGcCCACCGCcgCCUCCAa -3'
miRNA:   3'- aaGCGGGGCUG-----------C-GGUGGCG--GGAGGUa -5'
7344 5' -64.6 NC_001900.1 + 1766 0.69 0.151293
Target:  5'- -cUGCCCgGACGCgACCGCgUUCUGUg -3'
miRNA:   3'- aaGCGGGgCUGCGgUGGCGgGAGGUA- -5'
7344 5' -64.6 NC_001900.1 + 36051 0.68 0.168133
Target:  5'- --aGCCCuCGcCGCCGCCGCUgaCCAc -3'
miRNA:   3'- aagCGGG-GCuGCGGUGGCGGgaGGUa -5'
7344 5' -64.6 NC_001900.1 + 36181 0.68 0.172598
Target:  5'- aUCGCCUCGGCaGCCgaACCcCUCUCCGg -3'
miRNA:   3'- aAGCGGGGCUG-CGG--UGGcGGGAGGUa -5'
7344 5' -64.6 NC_001900.1 + 33300 0.67 0.181846
Target:  5'- -gCGUCggCCGGCGCagGCCGCaCCUCCAc -3'
miRNA:   3'- aaGCGG--GGCUGCGg-UGGCG-GGAGGUa -5'
7344 5' -64.6 NC_001900.1 + 1357 0.67 0.206904
Target:  5'- -aCGCgCUGGCgGUCGCCGCCCgcgaCCAg -3'
miRNA:   3'- aaGCGgGGCUG-CGGUGGCGGGa---GGUa -5'
7344 5' -64.6 NC_001900.1 + 38019 0.67 0.212261
Target:  5'- -gCGCCCgGugGCgACCcucgcccaGCCCUUCAc -3'
miRNA:   3'- aaGCGGGgCugCGgUGG--------CGGGAGGUa -5'
7344 5' -64.6 NC_001900.1 + 1459 0.67 0.212261
Target:  5'- -aCGCUCCGAagguuCGCCACC-CCCggCCGa -3'
miRNA:   3'- aaGCGGGGCU-----GCGGUGGcGGGa-GGUa -5'
7344 5' -64.6 NC_001900.1 + 47824 0.66 0.246948
Target:  5'- --aGCUCCGcUGCCGCCGCCa-CCGa -3'
miRNA:   3'- aagCGGGGCuGCGGUGGCGGgaGGUa -5'
7344 5' -64.6 NC_001900.1 + 25758 0.66 0.246948
Target:  5'- -gCGCCCCGGCGCaCGCgGagCUUCAUc -3'
miRNA:   3'- aaGCGGGGCUGCG-GUGgCggGAGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.