miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7347 3' -55.3 NC_001900.1 + 3089 0.67 0.612094
Target:  5'- aGGUCGuuGACGUGaCCGAcgUGCUcaaGCa -3'
miRNA:   3'- aCUAGUggCUGCAC-GGCUugGCGA---CG- -5'
7347 3' -55.3 NC_001900.1 + 43480 0.66 0.710767
Target:  5'- gGAUCgGCCGGCcaGCuCGGugcGCCGcCUGCu -3'
miRNA:   3'- aCUAG-UGGCUGcaCG-GCU---UGGC-GACG- -5'
7347 3' -55.3 NC_001900.1 + 27894 0.67 0.656212
Target:  5'- --uUCAcaguCCGAUc-GCUGGGCCGCUGCc -3'
miRNA:   3'- acuAGU----GGCUGcaCGGCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 34438 0.67 0.601084
Target:  5'- uUGGgcUCACCGACGU--UGGACagGCUGCu -3'
miRNA:   3'- -ACU--AGUGGCUGCAcgGCUUGg-CGACG- -5'
7347 3' -55.3 NC_001900.1 + 33771 0.68 0.546607
Target:  5'- -uGUCcUCGGCGUcucgGCCGAACCGUgcgGCc -3'
miRNA:   3'- acUAGuGGCUGCA----CGGCUUGGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 44694 0.69 0.504184
Target:  5'- cGGUCcCCuGCGgcagccagGCCGcuGGCCGCUGCc -3'
miRNA:   3'- aCUAGuGGcUGCa-------CGGC--UUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 19676 0.66 0.678177
Target:  5'- aGAUCGCuCGACugaugGCCGAGgagauggguCCGgUGCu -3'
miRNA:   3'- aCUAGUG-GCUGca---CGGCUU---------GGCgACG- -5'
7347 3' -55.3 NC_001900.1 + 42736 0.66 0.699966
Target:  5'- uUGA-CAgCGGcCGUgGCCGGugCgGCUGCg -3'
miRNA:   3'- -ACUaGUgGCU-GCA-CGGCUugG-CGACG- -5'
7347 3' -55.3 NC_001900.1 + 45609 0.72 0.343793
Target:  5'- cGAUgGCCGGgGUGUCGGuGCCGUUGa -3'
miRNA:   3'- aCUAgUGGCUgCACGGCU-UGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 9156 0.72 0.369317
Target:  5'- ---gCGCUGAUGaagGCCGAcacgacACCGCUGCu -3'
miRNA:   3'- acuaGUGGCUGCa--CGGCU------UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 41221 0.67 0.623121
Target:  5'- cUGGUCcugGCUGACG-GCCGcGACggugauccaCGCUGCg -3'
miRNA:   3'- -ACUAG---UGGCUGCaCGGC-UUG---------GCGACG- -5'
7347 3' -55.3 NC_001900.1 + 24281 0.67 0.634157
Target:  5'- aGGUgGCUGugGUGUCGcccccuuuGCCGCccGCg -3'
miRNA:   3'- aCUAgUGGCugCACGGCu-------UGGCGa-CG- -5'
7347 3' -55.3 NC_001900.1 + 4166 0.67 0.634157
Target:  5'- uUGAgUCcCCGAUGUGCCc-AUCGCUGg -3'
miRNA:   3'- -ACU-AGuGGCUGCACGGcuUGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 19475 0.67 0.64519
Target:  5'- cGAUgGgCCGGCGgcUGCCGGuggACCGCUc- -3'
miRNA:   3'- aCUAgU-GGCUGC--ACGGCU---UGGCGAcg -5'
7347 3' -55.3 NC_001900.1 + 9077 0.66 0.689099
Target:  5'- aGA-UACCGGCGagaaGCUGAGCUuccuuggaauGCUGCg -3'
miRNA:   3'- aCUaGUGGCUGCa---CGGCUUGG----------CGACG- -5'
7347 3' -55.3 NC_001900.1 + 15374 0.69 0.514665
Target:  5'- ---cUACCaGACGUGCUGGGCCgacaacGCUGUg -3'
miRNA:   3'- acuaGUGG-CUGCACGGCUUGG------CGACG- -5'
7347 3' -55.3 NC_001900.1 + 10569 0.69 0.513613
Target:  5'- cGAUCACCGAagGUGagauCGAcgcgauuACCGCUGa -3'
miRNA:   3'- aCUAGUGGCUg-CACg---GCU-------UGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 11322 0.69 0.493797
Target:  5'- cGuUCACCGACaugGCCGGuuacGCCgGUUGCg -3'
miRNA:   3'- aCuAGUGGCUGca-CGGCU----UGG-CGACG- -5'
7347 3' -55.3 NC_001900.1 + 40119 0.69 0.487611
Target:  5'- gGGUUGCCGuCGUGCCagaccucgccuucgaGGACCGCguccuccagGCg -3'
miRNA:   3'- aCUAGUGGCuGCACGG---------------CUUGGCGa--------CG- -5'
7347 3' -55.3 NC_001900.1 + 27447 0.7 0.43372
Target:  5'- cGAgCACCGAUGUGCCGA--CGCg-- -3'
miRNA:   3'- aCUaGUGGCUGCACGGCUugGCGacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.