Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7347 | 3' | -55.3 | NC_001900.1 | + | 37004 | 1.13 | 0.000508 |
Target: 5'- aUGAUCACCGACGUGCCGAACCGCUGCa -3' miRNA: 3'- -ACUAGUGGCUGCACGGCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 20217 | 0.67 | 0.656212 |
Target: 5'- cGAg-ACCGGCGUaGCCa---CGCUGCa -3' miRNA: 3'- aCUagUGGCUGCA-CGGcuugGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 27894 | 0.67 | 0.656212 |
Target: 5'- --uUCAcaguCCGAUc-GCUGGGCCGCUGCc -3' miRNA: 3'- acuAGU----GGCUGcaCGGCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 44406 | 0.66 | 0.72149 |
Target: 5'- cGAUCGCUGGCGUaCCGu-CCGggGUc -3' miRNA: 3'- aCUAGUGGCUGCAcGGCuuGGCgaCG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 15759 | 0.71 | 0.424122 |
Target: 5'- gGAUCuCCGAagaUGUGaCCGucgagcugaAGCCGCUGCu -3' miRNA: 3'- aCUAGuGGCU---GCAC-GGC---------UUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 40280 | 0.7 | 0.442465 |
Target: 5'- gGGUCAuguccUCGAcCGUGUggccggucggcagUGAGCCGCUGCg -3' miRNA: 3'- aCUAGU-----GGCU-GCACG-------------GCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 26376 | 0.69 | 0.493797 |
Target: 5'- cGAUCggGCUGACGUacgacgcuuGCacucGACCGCUGCg -3' miRNA: 3'- aCUAG--UGGCUGCA---------CGgc--UUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 48694 | 0.69 | 0.504184 |
Target: 5'- -uGUCGCUGuCGUcGCCGggUgGCUGUc -3' miRNA: 3'- acUAGUGGCuGCA-CGGCuuGgCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 34438 | 0.67 | 0.601084 |
Target: 5'- uUGGgcUCACCGACGU--UGGACagGCUGCu -3' miRNA: 3'- -ACU--AGUGGCUGCAcgGCUUGg-CGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 20755 | 0.67 | 0.65511 |
Target: 5'- ---aCGCUGACGUGUCGccgguacaucaagGACCGCgacccGCa -3' miRNA: 3'- acuaGUGGCUGCACGGC-------------UUGGCGa----CG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 27458 | 0.67 | 0.612094 |
Target: 5'- gGAUCAgCCuGgG-GCCGAGCCGCacgGCc -3' miRNA: 3'- aCUAGU-GGcUgCaCGGCUUGGCGa--CG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 33771 | 0.68 | 0.546607 |
Target: 5'- -uGUCcUCGGCGUcucgGCCGAACCGUgcgGCc -3' miRNA: 3'- acUAGuGGCUGCA----CGGCUUGGCGa--CG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 32728 | 0.72 | 0.335572 |
Target: 5'- -cAUCACCGACGUaGUCGGugC-CUGCc -3' miRNA: 3'- acUAGUGGCUGCA-CGGCUugGcGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 38605 | 0.67 | 0.634157 |
Target: 5'- -cGUCGuCCaGACGgcgauaCCGGAUCGCUGCa -3' miRNA: 3'- acUAGU-GG-CUGCac----GGCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 4077 | 0.72 | 0.335572 |
Target: 5'- aGGUCgaguccgaagagGCCGACaagaucCCGAACCGCUGCc -3' miRNA: 3'- aCUAG------------UGGCUGcac---GGCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 44694 | 0.69 | 0.504184 |
Target: 5'- cGGUCcCCuGCGgcagccagGCCGcuGGCCGCUGCc -3' miRNA: 3'- aCUAGuGGcUGCa-------CGGC--UUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 22811 | 0.67 | 0.64519 |
Target: 5'- cGAUCAUgGACGcGCucagCGAAgguCCGCUGUu -3' miRNA: 3'- aCUAGUGgCUGCaCG----GCUU---GGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 25742 | 0.67 | 0.656212 |
Target: 5'- --cUCGCCGACGcggGCCGcGCCcCgGCg -3' miRNA: 3'- acuAGUGGCUGCa--CGGCuUGGcGaCG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 8496 | 0.71 | 0.378109 |
Target: 5'- -uGUCACCGcAgGaGUgGAACCGCUGCu -3' miRNA: 3'- acUAGUGGC-UgCaCGgCUUGGCGACG- -5' |
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7347 | 3' | -55.3 | NC_001900.1 | + | 24710 | 0.69 | 0.482485 |
Target: 5'- aGAUCACUGGCGUcaucggcGCUGGugguACCGCaggGCc -3' miRNA: 3'- aCUAGUGGCUGCA-------CGGCU----UGGCGa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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