miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7347 3' -55.3 NC_001900.1 + 37004 1.13 0.000508
Target:  5'- aUGAUCACCGACGUGCCGAACCGCUGCa -3'
miRNA:   3'- -ACUAGUGGCUGCACGGCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 34835 0.73 0.296637
Target:  5'- gGA-CAUCGACGUGCCuGGCCGCg-- -3'
miRNA:   3'- aCUaGUGGCUGCACGGcUUGGCGacg -5'
7347 3' -55.3 NC_001900.1 + 21582 0.73 0.304134
Target:  5'- -cAUCGCCGACG-GCCGGcucaagGCCGUgcgGCu -3'
miRNA:   3'- acUAGUGGCUGCaCGGCU------UGGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 4077 0.72 0.335572
Target:  5'- aGGUCgaguccgaagagGCCGACaagaucCCGAACCGCUGCc -3'
miRNA:   3'- aCUAG------------UGGCUGcac---GGCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 32728 0.72 0.335572
Target:  5'- -cAUCACCGACGUaGUCGGugC-CUGCc -3'
miRNA:   3'- acUAGUGGCUGCA-CGGCUugGcGACG- -5'
7347 3' -55.3 NC_001900.1 + 45609 0.72 0.343793
Target:  5'- cGAUgGCCGGgGUGUCGGuGCCGUUGa -3'
miRNA:   3'- aCUAgUGGCUgCACGGCU-UGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 9156 0.72 0.369317
Target:  5'- ---gCGCUGAUGaagGCCGAcacgacACCGCUGCu -3'
miRNA:   3'- acuaGUGGCUGCa--CGGCU------UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 8496 0.71 0.378109
Target:  5'- -uGUCACCGcAgGaGUgGAACCGCUGCu -3'
miRNA:   3'- acUAGUGGC-UgCaCGgCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 15759 0.71 0.424122
Target:  5'- gGAUCuCCGAagaUGUGaCCGucgagcugaAGCCGCUGCu -3'
miRNA:   3'- aCUAGuGGCU---GCAC-GGC---------UUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 27447 0.7 0.43372
Target:  5'- cGAgCACCGAUGUGCCGA--CGCg-- -3'
miRNA:   3'- aCUaGUGGCUGCACGGCUugGCGacg -5'
7347 3' -55.3 NC_001900.1 + 40280 0.7 0.442465
Target:  5'- gGGUCAuguccUCGAcCGUGUggccggucggcagUGAGCCGCUGCg -3'
miRNA:   3'- aCUAGU-----GGCU-GCACG-------------GCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 24710 0.69 0.482485
Target:  5'- aGAUCACUGGCGUcaucggcGCUGGugguACCGCaggGCc -3'
miRNA:   3'- aCUAGUGGCUGCA-------CGGCU----UGGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 40119 0.69 0.487611
Target:  5'- gGGUUGCCGuCGUGCCagaccucgccuucgaGGACCGCguccuccagGCg -3'
miRNA:   3'- aCUAGUGGCuGCACGG---------------CUUGGCGa--------CG- -5'
7347 3' -55.3 NC_001900.1 + 11322 0.69 0.493797
Target:  5'- cGuUCACCGACaugGCCGGuuacGCCgGUUGCg -3'
miRNA:   3'- aCuAGUGGCUGca-CGGCU----UGG-CGACG- -5'
7347 3' -55.3 NC_001900.1 + 26376 0.69 0.493797
Target:  5'- cGAUCggGCUGACGUacgacgcuuGCacucGACCGCUGCg -3'
miRNA:   3'- aCUAG--UGGCUGCA---------CGgc--UUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 48694 0.69 0.504184
Target:  5'- -uGUCGCUGuCGUcGCCGggUgGCUGUc -3'
miRNA:   3'- acUAGUGGCuGCA-CGGCuuGgCGACG- -5'
7347 3' -55.3 NC_001900.1 + 44694 0.69 0.504184
Target:  5'- cGGUCcCCuGCGgcagccagGCCGcuGGCCGCUGCc -3'
miRNA:   3'- aCUAGuGGcUGCa-------CGGC--UUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 10569 0.69 0.513613
Target:  5'- cGAUCACCGAagGUGagauCGAcgcgauuACCGCUGa -3'
miRNA:   3'- aCUAGUGGCUg-CACg---GCU-------UGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 15374 0.69 0.514665
Target:  5'- ---cUACCaGACGUGCUGGGCCgacaacGCUGUg -3'
miRNA:   3'- acuaGUGG-CUGCACGGCUUGG------CGACG- -5'
7347 3' -55.3 NC_001900.1 + 18207 0.69 0.514665
Target:  5'- aUGAggCGCuCGACGUGCUGAACaagauCGUgaUGCa -3'
miRNA:   3'- -ACUa-GUG-GCUGCACGGCUUG-----GCG--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.