miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7347 3' -55.3 NC_001900.1 + 1353 0.67 0.656212
Target:  5'- gUGGUCAacgucCCGACcu-CCGAgAUCGCUGCa -3'
miRNA:   3'- -ACUAGU-----GGCUGcacGGCU-UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 1417 0.67 0.612094
Target:  5'- cGAUCACUGGCGacaCCGucauCCGCaagGCa -3'
miRNA:   3'- aCUAGUGGCUGCac-GGCuu--GGCGa--CG- -5'
7347 3' -55.3 NC_001900.1 + 2226 0.66 0.689099
Target:  5'- aGuUC-CCGACG-GCCGug-CGCUGCc -3'
miRNA:   3'- aCuAGuGGCUGCaCGGCuugGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 3089 0.67 0.612094
Target:  5'- aGGUCGuuGACGUGaCCGAcgUGCUcaaGCa -3'
miRNA:   3'- aCUAGUggCUGCAC-GGCUugGCGA---CG- -5'
7347 3' -55.3 NC_001900.1 + 4077 0.72 0.335572
Target:  5'- aGGUCgaguccgaagagGCCGACaagaucCCGAACCGCUGCc -3'
miRNA:   3'- aCUAG------------UGGCUGcac---GGCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 4166 0.67 0.634157
Target:  5'- uUGAgUCcCCGAUGUGCCc-AUCGCUGg -3'
miRNA:   3'- -ACU-AGuGGCUGCACGGcuUGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 7339 0.68 0.589004
Target:  5'- cGA-CGCCGACGUgGCCucaGAgaaccugagcaagGCCGCUGa -3'
miRNA:   3'- aCUaGUGGCUGCA-CGG---CU-------------UGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 8496 0.71 0.378109
Target:  5'- -uGUCACCGcAgGaGUgGAACCGCUGCu -3'
miRNA:   3'- acUAGUGGC-UgCaCGgCUUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 9077 0.66 0.689099
Target:  5'- aGA-UACCGGCGagaaGCUGAGCUuccuuggaauGCUGCg -3'
miRNA:   3'- aCUaGUGGCUGCa---CGGCUUGG----------CGACG- -5'
7347 3' -55.3 NC_001900.1 + 9156 0.72 0.369317
Target:  5'- ---gCGCUGAUGaagGCCGAcacgacACCGCUGCu -3'
miRNA:   3'- acuaGUGGCUGCa--CGGCU------UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 10569 0.69 0.513613
Target:  5'- cGAUCACCGAagGUGagauCGAcgcgauuACCGCUGa -3'
miRNA:   3'- aCUAGUGGCUg-CACg---GCU-------UGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 11322 0.69 0.493797
Target:  5'- cGuUCACCGACaugGCCGGuuacGCCgGUUGCg -3'
miRNA:   3'- aCuAGUGGCUGca-CGGCU----UGG-CGACG- -5'
7347 3' -55.3 NC_001900.1 + 15029 0.66 0.678177
Target:  5'- -cGUCGCCGAa--GCaGGcACCGCUGCa -3'
miRNA:   3'- acUAGUGGCUgcaCGgCU-UGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 15374 0.69 0.514665
Target:  5'- ---cUACCaGACGUGCUGGGCCgacaacGCUGUg -3'
miRNA:   3'- acuaGUGG-CUGCACGGCUUGG------CGACG- -5'
7347 3' -55.3 NC_001900.1 + 15759 0.71 0.424122
Target:  5'- gGAUCuCCGAagaUGUGaCCGucgagcugaAGCCGCUGCu -3'
miRNA:   3'- aCUAGuGGCU---GCAC-GGC---------UUGGCGACG- -5'
7347 3' -55.3 NC_001900.1 + 17455 0.69 0.535883
Target:  5'- cGGUCGgcCCGAacCG-GCCGAACCGCcagaaGCu -3'
miRNA:   3'- aCUAGU--GGCU--GCaCGGCUUGGCGa----CG- -5'
7347 3' -55.3 NC_001900.1 + 18207 0.69 0.514665
Target:  5'- aUGAggCGCuCGACGUGCUGAACaagauCGUgaUGCa -3'
miRNA:   3'- -ACUa-GUG-GCUGCACGGCUUG-----GCG--ACG- -5'
7347 3' -55.3 NC_001900.1 + 18584 0.66 0.667211
Target:  5'- cUGGUgC-CCGACGUgaGCCG-GCCGUUGg -3'
miRNA:   3'- -ACUA-GuGGCUGCA--CGGCuUGGCGACg -5'
7347 3' -55.3 NC_001900.1 + 19475 0.67 0.64519
Target:  5'- cGAUgGgCCGGCGgcUGCCGGuggACCGCUc- -3'
miRNA:   3'- aCUAgU-GGCUGC--ACGGCU---UGGCGAcg -5'
7347 3' -55.3 NC_001900.1 + 19676 0.66 0.678177
Target:  5'- aGAUCGCuCGACugaugGCCGAGgagauggguCCGgUGCu -3'
miRNA:   3'- aCUAGUG-GCUGca---CGGCUU---------GGCgACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.