miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7347 5' -55.3 NC_001900.1 + 2013 0.66 0.661182
Target:  5'- cGUGgGCGcGUGUCAuCCGAgaCUUCaGCGa -3'
miRNA:   3'- -CAUgCGC-CACAGUcGGCU--GAAGaCGC- -5'
7347 5' -55.3 NC_001900.1 + 33102 0.67 0.616789
Target:  5'- -aGCGCGGcGaUCAGCUucuugGGCUUCgugGCGa -3'
miRNA:   3'- caUGCGCCaC-AGUCGG-----CUGAAGa--CGC- -5'
7347 5' -55.3 NC_001900.1 + 33401 0.67 0.616789
Target:  5'- ---aGCGGUGUCGaCCGGCgcgCUGgCGa -3'
miRNA:   3'- caugCGCCACAGUcGGCUGaa-GAC-GC- -5'
7347 5' -55.3 NC_001900.1 + 15441 0.67 0.5836
Target:  5'- -gGCGUGGaUGUCGccGCCGA--UCUGCa -3'
miRNA:   3'- caUGCGCC-ACAGU--CGGCUgaAGACGc -5'
7347 5' -55.3 NC_001900.1 + 7745 0.68 0.539961
Target:  5'- -cGCGCuGUGUCucGCCGAacUCUGUGg -3'
miRNA:   3'- caUGCGcCACAGu-CGGCUgaAGACGC- -5'
7347 5' -55.3 NC_001900.1 + 9453 0.69 0.518546
Target:  5'- cGUGUGCGGUG-CuGUCGuACUUCUGCc -3'
miRNA:   3'- -CAUGCGCCACaGuCGGC-UGAAGACGc -5'
7347 5' -55.3 NC_001900.1 + 39897 0.71 0.398777
Target:  5'- cGUGCagcaGCGGUGUCGuGUCGGCUUCaucaGCGc -3'
miRNA:   3'- -CAUG----CGCCACAGU-CGGCUGAAGa---CGC- -5'
7347 5' -55.3 NC_001900.1 + 31677 0.71 0.397854
Target:  5'- --uCGCGGUGUCgAGCUGACUccgcagaUCgGCGu -3'
miRNA:   3'- cauGCGCCACAG-UCGGCUGA-------AGaCGC- -5'
7347 5' -55.3 NC_001900.1 + 40801 0.72 0.35435
Target:  5'- --uCGgGGUGUCGGCCGgcGCUUCgagaGCGu -3'
miRNA:   3'- cauGCgCCACAGUCGGC--UGAAGa---CGC- -5'
7347 5' -55.3 NC_001900.1 + 37038 1.08 0.001012
Target:  5'- uGUACGCGGUGUCAGCCGACUUCUGCGu -3'
miRNA:   3'- -CAUGCGCCACAGUCGGCUGAAGACGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.