Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 31738 | 0.66 | 0.577395 |
Target: 5'- aGCGAggagauguCC-GAACGCGUUGgcuCCUGCGUUg -3' miRNA: 3'- -CGCU--------GGuCUUGCGCAAC---GGGCGCGAg -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 23319 | 0.74 | 0.172818 |
Target: 5'- uGCG-CCGGGGCGCG--GCCCGCGUc- -3' miRNA: 3'- -CGCuGGUCUUGCGCaaCGGGCGCGag -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 19145 | 0.7 | 0.320676 |
Target: 5'- -aGGCgCAGGAgcuuCGCGUccUGgCCGCGCUCu -3' miRNA: 3'- cgCUG-GUCUU----GCGCA--ACgGGCGCGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 5228 | 0.69 | 0.372561 |
Target: 5'- cGCGcuggccguucccgacGCCAGaAGCgGCGUUccgguucGCUCGCGCUCa -3' miRNA: 3'- -CGC---------------UGGUC-UUG-CGCAA-------CGGGCGCGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 30786 | 0.69 | 0.378668 |
Target: 5'- -aGACCcuGGACGaCGUucuUGCCCGC-CUCg -3' miRNA: 3'- cgCUGGu-CUUGC-GCA---ACGGGCGcGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 3003 | 0.68 | 0.414824 |
Target: 5'- uCGGCCucauGAACGUcgagaucaugGUUGCcaugcgCCGCGCUCg -3' miRNA: 3'- cGCUGGu---CUUGCG----------CAACG------GGCGCGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 11436 | 0.68 | 0.424189 |
Target: 5'- cCGugCGGAGCGCGg-GCaaCGCGUUCu -3' miRNA: 3'- cGCugGUCUUGCGCaaCGg-GCGCGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 45042 | 0.67 | 0.46287 |
Target: 5'- aCGGCCAGAugGUcaggcgGUccuUGCCUG-GCUCg -3' miRNA: 3'- cGCUGGUCUugCG------CA---ACGGGCgCGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 32455 | 0.67 | 0.46287 |
Target: 5'- uUGACCGGAACGuCGgccgacaGCUCcCGCUCg -3' miRNA: 3'- cGCUGGUCUUGC-GCaa-----CGGGcGCGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 47716 | 0.67 | 0.46287 |
Target: 5'- gGCGACCGccAGCGCGUUGaacgCCGCacGCUUc -3' miRNA: 3'- -CGCUGGUc-UUGCGCAACg---GGCG--CGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 34646 | 0.66 | 0.555899 |
Target: 5'- cGUGGCCGaacucaagggcGAACGCGUuggGCgCGUGCa- -3' miRNA: 3'- -CGCUGGU-----------CUUGCGCAa--CGgGCGCGag -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 49001 | 0.66 | 0.534641 |
Target: 5'- aGCG-CCuGGGCgaggcgcucuaGCGUcgGCCCGUGCUUc -3' miRNA: 3'- -CGCuGGuCUUG-----------CGCAa-CGGGCGCGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 40316 | 0.66 | 0.533586 |
Target: 5'- cGCGACCacgucguaccgggAGAACGCGgaaUGCaCUGCaGCg- -3' miRNA: 3'- -CGCUGG-------------UCUUGCGCa--ACG-GGCG-CGag -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 25487 | 0.66 | 0.52412 |
Target: 5'- cCGACCGuaGGCGCGUUGUCguugaCGCGCa- -3' miRNA: 3'- cGCUGGUc-UUGCGCAACGG-----GCGCGag -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 48552 | 0.67 | 0.513678 |
Target: 5'- uUGGCCGGAACGUagGUUGUCgGcCGCa- -3' miRNA: 3'- cGCUGGUCUUGCG--CAACGGgC-GCGag -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 38246 | 0.67 | 0.502292 |
Target: 5'- uGCGGggaagcuCCGGGugGUGgaGUCUGCGCUg -3' miRNA: 3'- -CGCU-------GGUCUugCGCaaCGGGCGCGAg -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 20041 | 0.66 | 0.577394 |
Target: 5'- aGUGGCCuGAcgaGCGUUGCCCaG-GCUg -3' miRNA: 3'- -CGCUGGuCUug-CGCAACGGG-CgCGAg -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 12680 | 0.76 | 0.142861 |
Target: 5'- -gGACCAGAACG-GUcGCCCGCuGUUCa -3' miRNA: 3'- cgCUGGUCUUGCgCAaCGGGCG-CGAG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 6029 | 0.75 | 0.155071 |
Target: 5'- cGCGAgCUGGAGCGaGUUGUCCGCGC-Cg -3' miRNA: 3'- -CGCU-GGUCUUGCgCAACGGGCGCGaG- -5' |
|||||||
7350 | 5' | -57.7 | NC_001900.1 | + | 10398 | 0.72 | 0.249793 |
Target: 5'- aCGGCCAGGGCGUGau-CCCGCGUg- -3' miRNA: 3'- cGCUGGUCUUGCGCaacGGGCGCGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home