miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7350 5' -57.7 NC_001900.1 + 17547 0.68 0.433679
Target:  5'- gGUGAUCuGuucauCGCGcugaUGCCCGCGCUg -3'
miRNA:   3'- -CGCUGGuCuu---GCGCa---ACGGGCGCGAg -5'
7350 5' -57.7 NC_001900.1 + 11436 0.68 0.424189
Target:  5'- cCGugCGGAGCGCGg-GCaaCGCGUUCu -3'
miRNA:   3'- cGCugGUCUUGCGCaaCGg-GCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 3003 0.68 0.414824
Target:  5'- uCGGCCucauGAACGUcgagaucaugGUUGCcaugcgCCGCGCUCg -3'
miRNA:   3'- cGCUGGu---CUUGCG----------CAACG------GGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 4720 0.68 0.405587
Target:  5'- cGCGACCAc-GCGCaGUggguccacgacaUGUgCCGCGCUCg -3'
miRNA:   3'- -CGCUGGUcuUGCG-CA------------ACG-GGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 14232 0.68 0.405587
Target:  5'- cGCGGCCAGGcACGuCGaUGUCCGCaaGCg- -3'
miRNA:   3'- -CGCUGGUCU-UGC-GCaACGGGCG--CGag -5'
7350 5' -57.7 NC_001900.1 + 30786 0.69 0.378668
Target:  5'- -aGACCcuGGACGaCGUucuUGCCCGC-CUCg -3'
miRNA:   3'- cgCUGGu-CUUGC-GCA---ACGGGCGcGAG- -5'
7350 5' -57.7 NC_001900.1 + 5228 0.69 0.372561
Target:  5'- cGCGcuggccguucccgacGCCAGaAGCgGCGUUccgguucGCUCGCGCUCa -3'
miRNA:   3'- -CGC---------------UGGUC-UUG-CGCAA-------CGGGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 19145 0.7 0.320676
Target:  5'- -aGGCgCAGGAgcuuCGCGUccUGgCCGCGCUCu -3'
miRNA:   3'- cgCUG-GUCUU----GCGCA--ACgGGCGCGAG- -5'
7350 5' -57.7 NC_001900.1 + 29916 0.71 0.305376
Target:  5'- cGCGGCCAGGACGCGaaGCUCcUGCc- -3'
miRNA:   3'- -CGCUGGUCUUGCGCaaCGGGcGCGag -5'
7350 5' -57.7 NC_001900.1 + 24005 0.71 0.276471
Target:  5'- gGCGGCaCAGGugcuaccaGCGCGgccgaaGCCCGCGC-Ca -3'
miRNA:   3'- -CGCUG-GUCU--------UGCGCaa----CGGGCGCGaG- -5'
7350 5' -57.7 NC_001900.1 + 10398 0.72 0.249793
Target:  5'- aCGGCCAGGGCGUGau-CCCGCGUg- -3'
miRNA:   3'- cGCUGGUCUUGCGCaacGGGCGCGag -5'
7350 5' -57.7 NC_001900.1 + 23319 0.74 0.172818
Target:  5'- uGCG-CCGGGGCGCG--GCCCGCGUc- -3'
miRNA:   3'- -CGCuGGUCUUGCGCaaCGGGCGCGag -5'
7350 5' -57.7 NC_001900.1 + 6029 0.75 0.155071
Target:  5'- cGCGAgCUGGAGCGaGUUGUCCGCGC-Cg -3'
miRNA:   3'- -CGCU-GGUCUUGCgCAACGGGCGCGaG- -5'
7350 5' -57.7 NC_001900.1 + 12680 0.76 0.142861
Target:  5'- -gGACCAGAACG-GUcGCCCGCuGUUCa -3'
miRNA:   3'- cgCUGGUCUUGCgCAaCGGGCG-CGAG- -5'
7350 5' -57.7 NC_001900.1 + 37620 1.1 0.000397
Target:  5'- cGCGACCAGAACGCGUUGCCCGCGCUCc -3'
miRNA:   3'- -CGCUGGUCUUGCGCAACGGGCGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.