miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7351 3' -52.1 NC_001900.1 + 38343 1.12 0.001412
Target:  5'- gCCACCGACUUCGCGAACUCCAUACCGg -3'
miRNA:   3'- -GGUGGCUGAAGCGCUUGAGGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 44460 0.67 0.836418
Target:  5'- gCCACgCGAagaaCUUCuCGAccuGCUCCAgGCCGa -3'
miRNA:   3'- -GGUG-GCU----GAAGcGCU---UGAGGUaUGGC- -5'
7351 3' -52.1 NC_001900.1 + 7740 0.68 0.768741
Target:  5'- aCCGCCGcGCUgugucUCGcCGAACUCUGUgGCCc -3'
miRNA:   3'- -GGUGGC-UGA-----AGC-GCUUGAGGUA-UGGc -5'
7351 3' -52.1 NC_001900.1 + 46098 0.68 0.762554
Target:  5'- aCCAaCGGCUUCGCcgcgaagguagauguGAcCUCCAUcGCCGa -3'
miRNA:   3'- -GGUgGCUGAAGCG---------------CUuGAGGUA-UGGC- -5'
7351 3' -52.1 NC_001900.1 + 15111 0.69 0.737342
Target:  5'- gCCACCGGCUgguCGAGCgucggCCAcACCa -3'
miRNA:   3'- -GGUGGCUGAagcGCUUGa----GGUaUGGc -5'
7351 3' -52.1 NC_001900.1 + 6817 0.69 0.715845
Target:  5'- aCGCgGACUUCGCGAuggcggguuACUCgCAgggaGCCa -3'
miRNA:   3'- gGUGgCUGAAGCGCU---------UGAG-GUa---UGGc -5'
7351 3' -52.1 NC_001900.1 + 17187 0.66 0.853924
Target:  5'- uUCACCGACguggugUCGCaggguccgGGGCUCCAgcagcuCCa -3'
miRNA:   3'- -GGUGGCUGa-----AGCG--------CUUGAGGUau----GGc -5'
7351 3' -52.1 NC_001900.1 + 4984 0.67 0.830991
Target:  5'- aCC-CCGGCaugcUCGuCGGGCUCCAgcacggcggcggggGCCGg -3'
miRNA:   3'- -GGuGGCUGa---AGC-GCUUGAGGUa-------------UGGC- -5'
7351 3' -52.1 NC_001900.1 + 23323 0.69 0.737342
Target:  5'- gCC-CCGGCUggGcCGAGUUCUAUACCGg -3'
miRNA:   3'- -GGuGGCUGAagC-GCUUGAGGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 13645 0.7 0.660823
Target:  5'- gCCAgCGACgUUCaGCGGGCUCCgaucaaGUACCc -3'
miRNA:   3'- -GGUgGCUG-AAG-CGCUUGAGG------UAUGGc -5'
7351 3' -52.1 NC_001900.1 + 41004 0.72 0.56089
Target:  5'- uCCGCUGcGCggguaGCGGACUCCGUACUu -3'
miRNA:   3'- -GGUGGC-UGaag--CGCUUGAGGUAUGGc -5'
7351 3' -52.1 NC_001900.1 + 19840 0.66 0.862324
Target:  5'- aCACCGACcgaCGCGAggagcagaucaGCUCCGagUCGg -3'
miRNA:   3'- gGUGGCUGaa-GCGCU-----------UGAGGUauGGC- -5'
7351 3' -52.1 NC_001900.1 + 45055 0.71 0.637428
Target:  5'- aCAUCGGCUUCgugucucggcacaGCGGGCUCCgGUACgCGa -3'
miRNA:   3'- gGUGGCUGAAG-------------CGCUUGAGG-UAUG-GC- -5'
7351 3' -52.1 NC_001900.1 + 32680 0.67 0.81803
Target:  5'- --uCCGGCca-GCGAACUCCGcgaguucgucUGCCGa -3'
miRNA:   3'- gguGGCUGaagCGCUUGAGGU----------AUGGC- -5'
7351 3' -52.1 NC_001900.1 + 32961 0.67 0.845286
Target:  5'- aCACCgGACU---UGAACUCCAUcuuGCCGu -3'
miRNA:   3'- gGUGG-CUGAagcGCUUGAGGUA---UGGC- -5'
7351 3' -52.1 NC_001900.1 + 32765 0.67 0.812353
Target:  5'- cCCGCCugGACUgcgucguagaugucCGCGAGCg-CGUACCGg -3'
miRNA:   3'- -GGUGG--CUGAa-------------GCGCUUGagGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 38167 0.67 0.816145
Target:  5'- gCCugCGACaaccccuuucgUGCGGGCUCCAUGuuCCu -3'
miRNA:   3'- -GGugGCUGaa---------GCGCUUGAGGUAU--GGc -5'
7351 3' -52.1 NC_001900.1 + 43074 0.67 0.81803
Target:  5'- gCGCCGAUUccucgacguaGCGGGCgugccCCAUGCCGu -3'
miRNA:   3'- gGUGGCUGAag--------CGCUUGa----GGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 25034 0.67 0.81803
Target:  5'- gCACCGAgguuggCGCGGGCUUCG-GCCGc -3'
miRNA:   3'- gGUGGCUgaa---GCGCUUGAGGUaUGGC- -5'
7351 3' -52.1 NC_001900.1 + 21538 0.67 0.845286
Target:  5'- aCCGCCGACUUCcucggcGUGAGCaCCAagacggugcGCCGc -3'
miRNA:   3'- -GGUGGCUGAAG------CGCUUGaGGUa--------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.