Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7351 | 3' | -52.1 | NC_001900.1 | + | 2431 | 0.68 | 0.79884 |
Target: 5'- uCgGCCGACgagacaUCGCGGACUggaCC-UACCa -3' miRNA: 3'- -GgUGGCUGa-----AGCGCUUGA---GGuAUGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 4984 | 0.67 | 0.830991 |
Target: 5'- aCC-CCGGCaugcUCGuCGGGCUCCAgcacggcggcggggGCCGg -3' miRNA: 3'- -GGuGGCUGa---AGC-GCUUGAGGUa-------------UGGC- -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 6620 | 0.66 | 0.893386 |
Target: 5'- aCGCUGuACUUCucgGCGGACUCCG-ACgCGu -3' miRNA: 3'- gGUGGC-UGAAG---CGCUUGAGGUaUG-GC- -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 6817 | 0.69 | 0.715845 |
Target: 5'- aCGCgGACUUCGCGAuggcggguuACUCgCAgggaGCCa -3' miRNA: 3'- gGUGgCUGAAGCGCU---------UGAG-GUa---UGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 7740 | 0.68 | 0.768741 |
Target: 5'- aCCGCCGcGCUgugucUCGcCGAACUCUGUgGCCc -3' miRNA: 3'- -GGUGGC-UGA-----AGC-GCUUGAGGUA-UGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 8222 | 0.67 | 0.80853 |
Target: 5'- aUCACCGGC-UCGCGAG-UCUGgaaggACCGc -3' miRNA: 3'- -GGUGGCUGaAGCGCUUgAGGUa----UGGC- -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 8843 | 0.66 | 0.886014 |
Target: 5'- uCCACCGAgcgauCUUCGCGGgccACUCgAUGg-- -3' miRNA: 3'- -GGUGGCU-----GAAGCGCU---UGAGgUAUggc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 10006 | 0.71 | 0.582913 |
Target: 5'- gCCACCGGCaUCGCGGAggUCAU-CCa -3' miRNA: 3'- -GGUGGCUGaAGCGCUUgaGGUAuGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 13645 | 0.7 | 0.660823 |
Target: 5'- gCCAgCGACgUUCaGCGGGCUCCgaucaaGUACCc -3' miRNA: 3'- -GGUgGCUG-AAG-CGCUUGAGG------UAUGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 15111 | 0.69 | 0.737342 |
Target: 5'- gCCACCGGCUgguCGAGCgucggCCAcACCa -3' miRNA: 3'- -GGUGGCUGAagcGCUUGa----GGUaUGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 17187 | 0.66 | 0.853924 |
Target: 5'- uUCACCGACguggugUCGCaggguccgGGGCUCCAgcagcuCCa -3' miRNA: 3'- -GGUGGCUGa-----AGCG--------CUUGAGGUau----GGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 18648 | 0.68 | 0.78897 |
Target: 5'- aCAUCGACcggCGCGggUUCC-UGCuCGa -3' miRNA: 3'- gGUGGCUGaa-GCGCuuGAGGuAUG-GC- -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 19840 | 0.66 | 0.862324 |
Target: 5'- aCACCGACcgaCGCGAggagcagaucaGCUCCGagUCGg -3' miRNA: 3'- gGUGGCUGaa-GCGCU-----------UGAGGUauGGC- -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 20777 | 0.66 | 0.853924 |
Target: 5'- aCGCgGACUucgUCGCGGGuCUCCAcggaGCCc -3' miRNA: 3'- gGUGgCUGA---AGCGCUU-GAGGUa---UGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 21057 | 0.68 | 0.768741 |
Target: 5'- aCACCGGCccgaacggCGUGAuCUUCGUGCCc -3' miRNA: 3'- gGUGGCUGaa------GCGCUuGAGGUAUGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 21538 | 0.67 | 0.845286 |
Target: 5'- aCCGCCGACUUCcucggcGUGAGCaCCAagacggugcGCCGc -3' miRNA: 3'- -GGUGGCUGAAG------CGCUUGaGGUa--------UGGC- -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 22173 | 0.68 | 0.79884 |
Target: 5'- aCCGCCGACggCGaCGGuuccggCCGUugCGa -3' miRNA: 3'- -GGUGGCUGaaGC-GCUuga---GGUAugGC- -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 23323 | 0.69 | 0.737342 |
Target: 5'- gCC-CCGGCUggGcCGAGUUCUAUACCGg -3' miRNA: 3'- -GGuGGCUGAagC-GCUUGAGGUAUGGC- -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 24246 | 0.66 | 0.886014 |
Target: 5'- aCCACCGGCagCGaUGAGCgugCCAccGCCc -3' miRNA: 3'- -GGUGGCUGaaGC-GCUUGa--GGUa-UGGc -5' |
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7351 | 3' | -52.1 | NC_001900.1 | + | 25034 | 0.67 | 0.81803 |
Target: 5'- gCACCGAgguuggCGCGGGCUUCG-GCCGc -3' miRNA: 3'- gGUGGCUgaa---GCGCUUGAGGUaUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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