miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7351 3' -52.1 NC_001900.1 + 47806 0.71 0.582913
Target:  5'- aCCACCGAacccgcCGCcAGCUCCGcUGCCGc -3'
miRNA:   3'- -GGUGGCUgaa---GCGcUUGAGGU-AUGGC- -5'
7351 3' -52.1 NC_001900.1 + 46098 0.68 0.762554
Target:  5'- aCCAaCGGCUUCGCcgcgaagguagauguGAcCUCCAUcGCCGa -3'
miRNA:   3'- -GGUgGCUGAAGCG---------------CUuGAGGUA-UGGC- -5'
7351 3' -52.1 NC_001900.1 + 45055 0.71 0.637428
Target:  5'- aCAUCGGCUUCgugucucggcacaGCGGGCUCCgGUACgCGa -3'
miRNA:   3'- gGUGGCUGAAG-------------CGCUUGAGG-UAUG-GC- -5'
7351 3' -52.1 NC_001900.1 + 44460 0.67 0.836418
Target:  5'- gCCACgCGAagaaCUUCuCGAccuGCUCCAgGCCGa -3'
miRNA:   3'- -GGUG-GCU----GAAGcGCU---UGAGGUaUGGC- -5'
7351 3' -52.1 NC_001900.1 + 43074 0.67 0.81803
Target:  5'- gCGCCGAUUccucgacguaGCGGGCgugccCCAUGCCGu -3'
miRNA:   3'- gGUGGCUGAag--------CGCUUGa----GGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 42588 0.69 0.715845
Target:  5'- gCCGuuGACa--GCGGACUCCAgaGCCu -3'
miRNA:   3'- -GGUggCUGaagCGCUUGAGGUa-UGGc -5'
7351 3' -52.1 NC_001900.1 + 41992 0.66 0.870477
Target:  5'- gUCACCGucguggGCguagUCGCGGACcucgaagCCGUACUGc -3'
miRNA:   3'- -GGUGGC------UGa---AGCGCUUGa------GGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 41376 0.67 0.84441
Target:  5'- gCCGCCGGaucacgcCUUCGCGGuagaCGUACUGg -3'
miRNA:   3'- -GGUGGCU-------GAAGCGCUugagGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 41004 0.72 0.56089
Target:  5'- uCCGCUGcGCggguaGCGGACUCCGUACUu -3'
miRNA:   3'- -GGUGGC-UGaag--CGCUUGAGGUAUGGc -5'
7351 3' -52.1 NC_001900.1 + 39116 0.68 0.768741
Target:  5'- aCGCCGAUcUCuuCGGGCUUgAUGCCGa -3'
miRNA:   3'- gGUGGCUGaAGc-GCUUGAGgUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 38343 1.12 0.001412
Target:  5'- gCCACCGACUUCGCGAACUCCAUACCGg -3'
miRNA:   3'- -GGUGGCUGAAGCGCUUGAGGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 38167 0.67 0.816145
Target:  5'- gCCugCGACaaccccuuucgUGCGGGCUCCAUGuuCCu -3'
miRNA:   3'- -GGugGCUGaa---------GCGCUUGAGGUAU--GGc -5'
7351 3' -52.1 NC_001900.1 + 37165 0.67 0.830991
Target:  5'- aCCGCCGAuCaguucgagguucuucUUCGCGGACUCgGcgAUCGa -3'
miRNA:   3'- -GGUGGCU-G---------------AAGCGCUUGAGgUa-UGGC- -5'
7351 3' -52.1 NC_001900.1 + 35217 0.7 0.694009
Target:  5'- gCACCGGCUgguacCGGGCUCCgGUAUCGa -3'
miRNA:   3'- gGUGGCUGAagc--GCUUGAGG-UAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 33258 0.67 0.836418
Target:  5'- aCCA-CGGCUUCGCGGGC-CUucugGCCc -3'
miRNA:   3'- -GGUgGCUGAAGCGCUUGaGGua--UGGc -5'
7351 3' -52.1 NC_001900.1 + 32961 0.67 0.845286
Target:  5'- aCACCgGACU---UGAACUCCAUcuuGCCGu -3'
miRNA:   3'- gGUGG-CUGAagcGCUUGAGGUA---UGGC- -5'
7351 3' -52.1 NC_001900.1 + 32765 0.67 0.812353
Target:  5'- cCCGCCugGACUgcgucguagaugucCGCGAGCg-CGUACCGg -3'
miRNA:   3'- -GGUGG--CUGAa-------------GCGCUUGagGUAUGGC- -5'
7351 3' -52.1 NC_001900.1 + 32680 0.67 0.81803
Target:  5'- --uCCGGCca-GCGAACUCCGcgaguucgucUGCCGa -3'
miRNA:   3'- gguGGCUGaagCGCUUGAGGU----------AUGGC- -5'
7351 3' -52.1 NC_001900.1 + 31570 0.73 0.486042
Target:  5'- aCCACCGAgCUgacccaUCGCcugcagaccGGACUCCAUgaGCCGg -3'
miRNA:   3'- -GGUGGCU-GA------AGCG---------CUUGAGGUA--UGGC- -5'
7351 3' -52.1 NC_001900.1 + 29291 0.67 0.836418
Target:  5'- -aGCCGGCgguUgGCGAACUCCucguCCu -3'
miRNA:   3'- ggUGGCUGa--AgCGCUUGAGGuau-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.