Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7353 | 3' | -52.7 | NC_001900.1 | + | 14369 | 0.68 | 0.717332 |
Target: 5'- aAGAGGU-CGACGGCGauguggacuuCCacacgguccuGCACGCGCc -3' miRNA: 3'- gUCUUCAuGCUGUCGU----------GG----------CGUGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 15806 | 0.68 | 0.706327 |
Target: 5'- aAGGGugACGGCAGCuacuCCGCGC-CGUg -3' miRNA: 3'- gUCUUcaUGCUGUCGu---GGCGUGuGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 5134 | 0.68 | 0.706327 |
Target: 5'- uGGggGUguuccucuACGACGGCGCaCGCGCcuggaACGa -3' miRNA: 3'- gUCuuCA--------UGCUGUCGUG-GCGUG-----UGCg -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 38286 | 0.68 | 0.704117 |
Target: 5'- gUAGAAGUcccggcccagguCGGCAGCuuCCGCAUaccgACGCu -3' miRNA: 3'- -GUCUUCAu-----------GCUGUCGu-GGCGUG----UGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 8915 | 0.69 | 0.650397 |
Target: 5'- aCAGAGucGCGGCAGCGgucCUGCugGaCGCg -3' miRNA: 3'- -GUCUUcaUGCUGUCGU---GGCGugU-GCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 18657 | 0.69 | 0.650397 |
Target: 5'- aGGAcaAGgcCGGCcgugcGGCGCUGCAgGCGCa -3' miRNA: 3'- gUCU--UCauGCUG-----UCGUGGCGUgUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 8947 | 0.69 | 0.627821 |
Target: 5'- -cGAGGUcuggcACGACGGCaACCcggugcuucgGCACACGUc -3' miRNA: 3'- guCUUCA-----UGCUGUCG-UGG----------CGUGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 30394 | 0.69 | 0.627821 |
Target: 5'- -cGAGcUGCGccuGCAGCGCCGCACG-GCc -3' miRNA: 3'- guCUUcAUGC---UGUCGUGGCGUGUgCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 20079 | 0.7 | 0.616533 |
Target: 5'- gCGGAAGauccaACuGCGGCGCUGCAaGCGCg -3' miRNA: 3'- -GUCUUCa----UGcUGUCGUGGCGUgUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 40733 | 0.7 | 0.582797 |
Target: 5'- cCAGcGGUcaGCGAugucguCAGCGCCGCGaGCGCc -3' miRNA: 3'- -GUCuUCA--UGCU------GUCGUGGCGUgUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 18559 | 0.7 | 0.571625 |
Target: 5'- cCGGAucugcAGUGCGcUGGCACCGCugGUGCc -3' miRNA: 3'- -GUCU-----UCAUGCuGUCGUGGCGugUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 32014 | 0.7 | 0.571625 |
Target: 5'- gAGGAG-ACGGCGGUcuugGCCGCuuccaGCGCg -3' miRNA: 3'- gUCUUCaUGCUGUCG----UGGCGug---UGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 37120 | 0.7 | 0.560505 |
Target: 5'- gUAGAAcucaGGCAGCACCGU-CACGCc -3' miRNA: 3'- -GUCUUcaugCUGUCGUGGCGuGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 43347 | 0.7 | 0.560505 |
Target: 5'- -cGAGGUugGugAGC-CCGCcguugauccgGCGCGUg -3' miRNA: 3'- guCUUCAugCugUCGuGGCG----------UGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 9163 | 0.72 | 0.464033 |
Target: 5'- -uGAAGgcCGACAcGaCACCGCugcuGCACGCg -3' miRNA: 3'- guCUUCauGCUGU-C-GUGGCG----UGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 12025 | 0.72 | 0.453833 |
Target: 5'- gCAGAAGU-CGGCuGaCACCGCGuacaACGCg -3' miRNA: 3'- -GUCUUCAuGCUGuC-GUGGCGUg---UGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 4731 | 0.73 | 0.443755 |
Target: 5'- gCAGuGGGUccACGACAuGUGCCGCGCuCGCg -3' miRNA: 3'- -GUC-UUCA--UGCUGU-CGUGGCGUGuGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 23024 | 0.74 | 0.386078 |
Target: 5'- aAGcAGUAccCGACGGCACgGCGgCACGCc -3' miRNA: 3'- gUCuUCAU--GCUGUCGUGgCGU-GUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 15762 | 0.74 | 0.359154 |
Target: 5'- uGGAGGUGCGGCcuGCGCCgGCcgACGCGUu -3' miRNA: 3'- gUCUUCAUGCUGu-CGUGG-CG--UGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 14143 | 0.75 | 0.325345 |
Target: 5'- --cGAGUACGACucaucGC-CCGCACugGCg -3' miRNA: 3'- gucUUCAUGCUGu----CGuGGCGUGugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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