Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7353 | 3' | -52.7 | NC_001900.1 | + | 21555 | 0.67 | 0.781066 |
Target: 5'- aAGguGUcugACG-CGGCACCGUACAucuuCGCa -3' miRNA: 3'- gUCuuCA---UGCuGUCGUGGCGUGU----GCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 40733 | 0.7 | 0.582797 |
Target: 5'- cCAGcGGUcaGCGAugucguCAGCGCCGCGaGCGCc -3' miRNA: 3'- -GUCuUCA--UGCU------GUCGUGGCGUgUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 8307 | 0.67 | 0.749765 |
Target: 5'- uGGuGGUucACGGCGGCGCuCGCG-GCGCu -3' miRNA: 3'- gUCuUCA--UGCUGUCGUG-GCGUgUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 25038 | 0.67 | 0.770779 |
Target: 5'- -cGAGGUugGcGCgGGCuucgGCCGCGCugGUa -3' miRNA: 3'- guCUUCAugC-UG-UCG----UGGCGUGugCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 5574 | 0.67 | 0.781066 |
Target: 5'- -cGGAGcagGCGGC-GCACCGaGCugGCc -3' miRNA: 3'- guCUUCa--UGCUGuCGUGGCgUGugCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 47694 | 0.66 | 0.80114 |
Target: 5'- aCGGuGAGUGCuggucgcgGGCGGCgACCGCcaGCGCGUu -3' miRNA: 3'- -GUC-UUCAUG--------CUGUCG-UGGCG--UGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 26716 | 0.66 | 0.829829 |
Target: 5'- aCGGAAGcaacGCaGGCAGUACCGaacagaACACGg -3' miRNA: 3'- -GUCUUCa---UG-CUGUCGUGGCg-----UGUGCg -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 48380 | 0.66 | 0.829829 |
Target: 5'- cCAGAGGcugaaaucggGCGucagaGCAGCuccaACCGCuuGCACGCg -3' miRNA: 3'- -GUCUUCa---------UGC-----UGUCG----UGGCG--UGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 32087 | 0.66 | 0.829829 |
Target: 5'- --cGAGUGCGACcacaccggcuccAGCGCCGa--ACGCu -3' miRNA: 3'- gucUUCAUGCUG------------UCGUGGCgugUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 4428 | 0.67 | 0.749765 |
Target: 5'- uGGGAGUccuACGGCA-UGCCGCuuACGCu -3' miRNA: 3'- gUCUUCA---UGCUGUcGUGGCGugUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 15806 | 0.68 | 0.706327 |
Target: 5'- aAGGGugACGGCAGCuacuCCGCGC-CGUg -3' miRNA: 3'- gUCUUcaUGCUGUCGu---GGCGUGuGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 38286 | 0.68 | 0.704117 |
Target: 5'- gUAGAAGUcccggcccagguCGGCAGCuuCCGCAUaccgACGCu -3' miRNA: 3'- -GUCUUCAu-----------GCUGUCGu-GGCGUG----UGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 23024 | 0.74 | 0.386078 |
Target: 5'- aAGcAGUAccCGACGGCACgGCGgCACGCc -3' miRNA: 3'- gUCuUCAU--GCUGUCGUGgCGU-GUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 12025 | 0.72 | 0.453833 |
Target: 5'- gCAGAAGU-CGGCuGaCACCGCGuacaACGCg -3' miRNA: 3'- -GUCUUCAuGCUGuC-GUGGCGUg---UGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 9163 | 0.72 | 0.464033 |
Target: 5'- -uGAAGgcCGACAcGaCACCGCugcuGCACGCg -3' miRNA: 3'- guCUUCauGCUGU-C-GUGGCG----UGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 32014 | 0.7 | 0.571625 |
Target: 5'- gAGGAG-ACGGCGGUcuugGCCGCuuccaGCGCg -3' miRNA: 3'- gUCUUCaUGCUGUCG----UGGCGug---UGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 43347 | 0.7 | 0.560505 |
Target: 5'- -cGAGGUugGugAGC-CCGCcguugauccgGCGCGUg -3' miRNA: 3'- guCUUCAugCugUCGuGGCG----------UGUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 18559 | 0.7 | 0.571625 |
Target: 5'- cCGGAucugcAGUGCGcUGGCACCGCugGUGCc -3' miRNA: 3'- -GUCU-----UCAUGCuGUCGUGGCGugUGCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 30394 | 0.69 | 0.627821 |
Target: 5'- -cGAGcUGCGccuGCAGCGCCGCACG-GCc -3' miRNA: 3'- guCUUcAUGC---UGUCGUGGCGUGUgCG- -5' |
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7353 | 3' | -52.7 | NC_001900.1 | + | 8915 | 0.69 | 0.650397 |
Target: 5'- aCAGAGucGCGGCAGCGgucCUGCugGaCGCg -3' miRNA: 3'- -GUCUUcaUGCUGUCGU---GGCGugU-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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