miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7353 3' -52.7 NC_001900.1 + 8692 0.78 0.214026
Target:  5'- cCAGAAGUACGGCGGCGaaGUGCccCGCg -3'
miRNA:   3'- -GUCUUCAUGCUGUCGUggCGUGu-GCG- -5'
7353 3' -52.7 NC_001900.1 + 7050 0.66 0.80114
Target:  5'- uGGAgcAGUACGGCuucgAGguCCGCGacUACGCc -3'
miRNA:   3'- gUCU--UCAUGCUG----UCguGGCGU--GUGCG- -5'
7353 3' -52.7 NC_001900.1 + 17357 0.66 0.814755
Target:  5'- gCAGGAGUucgccaacgguuucaACGACauGGUcaACCGCGuCACGUc -3'
miRNA:   3'- -GUCUUCA---------------UGCUG--UCG--UGGCGU-GUGCG- -5'
7353 3' -52.7 NC_001900.1 + 32213 0.66 0.829829
Target:  5'- cCAGcGGUucuugAUGAC-GUACCGC-CACGCc -3'
miRNA:   3'- -GUCuUCA-----UGCUGuCGUGGCGuGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 40733 0.7 0.582797
Target:  5'- cCAGcGGUcaGCGAugucguCAGCGCCGCGaGCGCc -3'
miRNA:   3'- -GUCuUCA--UGCU------GUCGUGGCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 20079 0.7 0.616533
Target:  5'- gCGGAAGauccaACuGCGGCGCUGCAaGCGCg -3'
miRNA:   3'- -GUCUUCa----UGcUGUCGUGGCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 18657 0.69 0.650397
Target:  5'- aGGAcaAGgcCGGCcgugcGGCGCUGCAgGCGCa -3'
miRNA:   3'- gUCU--UCauGCUG-----UCGUGGCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 5134 0.68 0.706327
Target:  5'- uGGggGUguuccucuACGACGGCGCaCGCGCcuggaACGa -3'
miRNA:   3'- gUCuuCA--------UGCUGUCGUG-GCGUG-----UGCg -5'
7353 3' -52.7 NC_001900.1 + 1337 0.67 0.739064
Target:  5'- gCAGAAgcGUGCGGC-GUucaaCGCGCugGCg -3'
miRNA:   3'- -GUCUU--CAUGCUGuCGug--GCGUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 32422 0.67 0.781066
Target:  5'- -cGGAGccCGACAGCuCCGUAaACGCc -3'
miRNA:   3'- guCUUCauGCUGUCGuGGCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 21981 0.67 0.781066
Target:  5'- uGGAAGUGCGGCuuucGGCAugUCG-ACugGCu -3'
miRNA:   3'- gUCUUCAUGCUG----UCGU--GGCgUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 44687 0.67 0.739064
Target:  5'- uGGAacgcGGUccccuGCGGCAGCcagGCCGCugGcCGCu -3'
miRNA:   3'- gUCU----UCA-----UGCUGUCG---UGGCGugU-GCG- -5'
7353 3' -52.7 NC_001900.1 + 14143 0.75 0.325345
Target:  5'- --cGAGUACGACucaucGC-CCGCACugGCg -3'
miRNA:   3'- gucUUCAUGCUGu----CGuGGCGUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 16266 0.67 0.781066
Target:  5'- -cGAGGUugGGaugAGgACCGgUACGCGCu -3'
miRNA:   3'- guCUUCAugCUg--UCgUGGC-GUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 4731 0.73 0.443755
Target:  5'- gCAGuGGGUccACGACAuGUGCCGCGCuCGCg -3'
miRNA:   3'- -GUC-UUCA--UGCUGU-CGUGGCGUGuGCG- -5'
7353 3' -52.7 NC_001900.1 + 14369 0.68 0.717332
Target:  5'- aAGAGGU-CGACGGCGauguggacuuCCacacgguccuGCACGCGCc -3'
miRNA:   3'- gUCUUCAuGCUGUCGU----------GG----------CGUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 21555 0.67 0.781066
Target:  5'- aAGguGUcugACG-CGGCACCGUACAucuuCGCa -3'
miRNA:   3'- gUCuuCA---UGCuGUCGUGGCGUGU----GCG- -5'
7353 3' -52.7 NC_001900.1 + 33464 0.66 0.80114
Target:  5'- -----aUGgGGCAuGCGCCGUugGCGCa -3'
miRNA:   3'- gucuucAUgCUGU-CGUGGCGugUGCG- -5'
7353 3' -52.7 NC_001900.1 + 37120 0.7 0.560505
Target:  5'- gUAGAAcucaGGCAGCACCGU-CACGCc -3'
miRNA:   3'- -GUCUUcaugCUGUCGUGGCGuGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 8947 0.69 0.627821
Target:  5'- -cGAGGUcuggcACGACGGCaACCcggugcuucgGCACACGUc -3'
miRNA:   3'- guCUUCA-----UGCUGUCG-UGG----------CGUGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.