miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7353 3' -52.7 NC_001900.1 + 39611 1.13 0.000902
Target:  5'- gCAGAAGUACGACAGCACCGCACACGCg -3'
miRNA:   3'- -GUCUUCAUGCUGUCGUGGCGUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 8692 0.78 0.214026
Target:  5'- cCAGAAGUACGGCGGCGaaGUGCccCGCg -3'
miRNA:   3'- -GUCUUCAUGCUGUCGUggCGUGu-GCG- -5'
7353 3' -52.7 NC_001900.1 + 14143 0.75 0.325345
Target:  5'- --cGAGUACGACucaucGC-CCGCACugGCg -3'
miRNA:   3'- gucUUCAUGCUGu----CGuGGCGUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 15762 0.74 0.359154
Target:  5'- uGGAGGUGCGGCcuGCGCCgGCcgACGCGUu -3'
miRNA:   3'- gUCUUCAUGCUGu-CGUGG-CG--UGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 23024 0.74 0.386078
Target:  5'- aAGcAGUAccCGACGGCACgGCGgCACGCc -3'
miRNA:   3'- gUCuUCAU--GCUGUCGUGgCGU-GUGCG- -5'
7353 3' -52.7 NC_001900.1 + 4731 0.73 0.443755
Target:  5'- gCAGuGGGUccACGACAuGUGCCGCGCuCGCg -3'
miRNA:   3'- -GUC-UUCA--UGCUGU-CGUGGCGUGuGCG- -5'
7353 3' -52.7 NC_001900.1 + 12025 0.72 0.453833
Target:  5'- gCAGAAGU-CGGCuGaCACCGCGuacaACGCg -3'
miRNA:   3'- -GUCUUCAuGCUGuC-GUGGCGUg---UGCG- -5'
7353 3' -52.7 NC_001900.1 + 9163 0.72 0.464033
Target:  5'- -uGAAGgcCGACAcGaCACCGCugcuGCACGCg -3'
miRNA:   3'- guCUUCauGCUGU-C-GUGGCG----UGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 37120 0.7 0.560505
Target:  5'- gUAGAAcucaGGCAGCACCGU-CACGCc -3'
miRNA:   3'- -GUCUUcaugCUGUCGUGGCGuGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 43347 0.7 0.560505
Target:  5'- -cGAGGUugGugAGC-CCGCcguugauccgGCGCGUg -3'
miRNA:   3'- guCUUCAugCugUCGuGGCG----------UGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 18559 0.7 0.571625
Target:  5'- cCGGAucugcAGUGCGcUGGCACCGCugGUGCc -3'
miRNA:   3'- -GUCU-----UCAUGCuGUCGUGGCGugUGCG- -5'
7353 3' -52.7 NC_001900.1 + 32014 0.7 0.571625
Target:  5'- gAGGAG-ACGGCGGUcuugGCCGCuuccaGCGCg -3'
miRNA:   3'- gUCUUCaUGCUGUCG----UGGCGug---UGCG- -5'
7353 3' -52.7 NC_001900.1 + 40733 0.7 0.582797
Target:  5'- cCAGcGGUcaGCGAugucguCAGCGCCGCGaGCGCc -3'
miRNA:   3'- -GUCuUCA--UGCU------GUCGUGGCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 20079 0.7 0.616533
Target:  5'- gCGGAAGauccaACuGCGGCGCUGCAaGCGCg -3'
miRNA:   3'- -GUCUUCa----UGcUGUCGUGGCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 8947 0.69 0.627821
Target:  5'- -cGAGGUcuggcACGACGGCaACCcggugcuucgGCACACGUc -3'
miRNA:   3'- guCUUCA-----UGCUGUCG-UGG----------CGUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 30394 0.69 0.627821
Target:  5'- -cGAGcUGCGccuGCAGCGCCGCACG-GCc -3'
miRNA:   3'- guCUUcAUGC---UGUCGUGGCGUGUgCG- -5'
7353 3' -52.7 NC_001900.1 + 8915 0.69 0.650397
Target:  5'- aCAGAGucGCGGCAGCGgucCUGCugGaCGCg -3'
miRNA:   3'- -GUCUUcaUGCUGUCGU---GGCGugU-GCG- -5'
7353 3' -52.7 NC_001900.1 + 18657 0.69 0.650397
Target:  5'- aGGAcaAGgcCGGCcgugcGGCGCUGCAgGCGCa -3'
miRNA:   3'- gUCU--UCauGCUG-----UCGUGGCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 38286 0.68 0.704117
Target:  5'- gUAGAAGUcccggcccagguCGGCAGCuuCCGCAUaccgACGCu -3'
miRNA:   3'- -GUCUUCAu-----------GCUGUCGu-GGCGUG----UGCG- -5'
7353 3' -52.7 NC_001900.1 + 15806 0.68 0.706327
Target:  5'- aAGGGugACGGCAGCuacuCCGCGC-CGUg -3'
miRNA:   3'- gUCUUcaUGCUGUCGu---GGCGUGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.