miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7353 3' -52.7 NC_001900.1 + 1337 0.67 0.739064
Target:  5'- gCAGAAgcGUGCGGC-GUucaaCGCGCugGCg -3'
miRNA:   3'- -GUCUU--CAUGCUGuCGug--GCGUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 4428 0.67 0.749765
Target:  5'- uGGGAGUccuACGGCA-UGCCGCuuACGCu -3'
miRNA:   3'- gUCUUCA---UGCUGUcGUGGCGugUGCG- -5'
7353 3' -52.7 NC_001900.1 + 4731 0.73 0.443755
Target:  5'- gCAGuGGGUccACGACAuGUGCCGCGCuCGCg -3'
miRNA:   3'- -GUC-UUCA--UGCUGU-CGUGGCGUGuGCG- -5'
7353 3' -52.7 NC_001900.1 + 5134 0.68 0.706327
Target:  5'- uGGggGUguuccucuACGACGGCGCaCGCGCcuggaACGa -3'
miRNA:   3'- gUCuuCA--------UGCUGUCGUG-GCGUG-----UGCg -5'
7353 3' -52.7 NC_001900.1 + 5405 0.66 0.835339
Target:  5'- aAGAAGgauugggaucccaACGACccgaagcugaAGuCGCCGUACGCGCc -3'
miRNA:   3'- gUCUUCa------------UGCUG----------UC-GUGGCGUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 5574 0.67 0.781066
Target:  5'- -cGGAGcagGCGGC-GCACCGaGCugGCc -3'
miRNA:   3'- guCUUCa--UGCUGuCGUGGCgUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 5967 0.66 0.829829
Target:  5'- aAGAAcgGCGACGGCAUgGgGC-CGCc -3'
miRNA:   3'- gUCUUcaUGCUGUCGUGgCgUGuGCG- -5'
7353 3' -52.7 NC_001900.1 + 7050 0.66 0.80114
Target:  5'- uGGAgcAGUACGGCuucgAGguCCGCGacUACGCc -3'
miRNA:   3'- gUCU--UCAUGCUG----UCguGGCGU--GUGCG- -5'
7353 3' -52.7 NC_001900.1 + 8307 0.67 0.749765
Target:  5'- uGGuGGUucACGGCGGCGCuCGCG-GCGCu -3'
miRNA:   3'- gUCuUCA--UGCUGUCGUG-GCGUgUGCG- -5'
7353 3' -52.7 NC_001900.1 + 8692 0.78 0.214026
Target:  5'- cCAGAAGUACGGCGGCGaaGUGCccCGCg -3'
miRNA:   3'- -GUCUUCAUGCUGUCGUggCGUGu-GCG- -5'
7353 3' -52.7 NC_001900.1 + 8915 0.69 0.650397
Target:  5'- aCAGAGucGCGGCAGCGgucCUGCugGaCGCg -3'
miRNA:   3'- -GUCUUcaUGCUGUCGU---GGCGugU-GCG- -5'
7353 3' -52.7 NC_001900.1 + 8947 0.69 0.627821
Target:  5'- -cGAGGUcuggcACGACGGCaACCcggugcuucgGCACACGUc -3'
miRNA:   3'- guCUUCA-----UGCUGUCG-UGG----------CGUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 9163 0.72 0.464033
Target:  5'- -uGAAGgcCGACAcGaCACCGCugcuGCACGCg -3'
miRNA:   3'- guCUUCauGCUGU-C-GUGGCG----UGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 12025 0.72 0.453833
Target:  5'- gCAGAAGU-CGGCuGaCACCGCGuacaACGCg -3'
miRNA:   3'- -GUCUUCAuGCUGuC-GUGGCGUg---UGCG- -5'
7353 3' -52.7 NC_001900.1 + 14143 0.75 0.325345
Target:  5'- --cGAGUACGACucaucGC-CCGCACugGCg -3'
miRNA:   3'- gucUUCAUGCUGu----CGuGGCGUGugCG- -5'
7353 3' -52.7 NC_001900.1 + 14369 0.68 0.717332
Target:  5'- aAGAGGU-CGACGGCGauguggacuuCCacacgguccuGCACGCGCc -3'
miRNA:   3'- gUCUUCAuGCUGUCGU----------GG----------CGUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 15762 0.74 0.359154
Target:  5'- uGGAGGUGCGGCcuGCGCCgGCcgACGCGUu -3'
miRNA:   3'- gUCUUCAUGCUGu-CGUGG-CG--UGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 15806 0.68 0.706327
Target:  5'- aAGGGugACGGCAGCuacuCCGCGC-CGUg -3'
miRNA:   3'- gUCUUcaUGCUGUCGu---GGCGUGuGCG- -5'
7353 3' -52.7 NC_001900.1 + 16266 0.67 0.781066
Target:  5'- -cGAGGUugGGaugAGgACCGgUACGCGCu -3'
miRNA:   3'- guCUUCAugCUg--UCgUGGC-GUGUGCG- -5'
7353 3' -52.7 NC_001900.1 + 17357 0.66 0.814755
Target:  5'- gCAGGAGUucgccaacgguuucaACGACauGGUcaACCGCGuCACGUc -3'
miRNA:   3'- -GUCUUCA---------------UGCUG--UCG--UGGCGU-GUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.