miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7354 3' -56.4 NC_001900.1 + 1053 0.72 0.287793
Target:  5'- gGCGCGAugGAAUgaucgCUGAGCUauggucuggCGGAUACc -3'
miRNA:   3'- -CGCGCUugCUUG-----GACUCGG---------GCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 1173 0.67 0.57477
Target:  5'- gGCgGCGGugGAGCCgccgGAagcgGCCgGGGCGg -3'
miRNA:   3'- -CG-CGCUugCUUGGa---CU----CGGgCCUGUg -5'
7354 3' -56.4 NC_001900.1 + 1412 0.67 0.542496
Target:  5'- -aGCGAagAgGGACCaGAuGCUCGGAUACg -3'
miRNA:   3'- cgCGCU--UgCUUGGaCU-CGGGCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 1502 0.66 0.641439
Target:  5'- gGCGaUGGACGAcgccauguccaagauCCUGAGCCa-GGCGCa -3'
miRNA:   3'- -CGC-GCUUGCUu--------------GGACUCGGgcCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 7095 0.67 0.542496
Target:  5'- uCGCGAGuCGGacgGCUUcGGCCCGGACuCg -3'
miRNA:   3'- cGCGCUU-GCU---UGGAcUCGGGCCUGuG- -5'
7354 3' -56.4 NC_001900.1 + 7918 0.69 0.450069
Target:  5'- -gGCGAuCGAcCCggaGAGCCCGGAUcCg -3'
miRNA:   3'- cgCGCUuGCUuGGa--CUCGGGCCUGuG- -5'
7354 3' -56.4 NC_001900.1 + 10416 0.68 0.510844
Target:  5'- cGCGUGAGCGGGCUc--GCaaGGACAUg -3'
miRNA:   3'- -CGCGCUUGCUUGGacuCGggCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 10494 0.7 0.402595
Target:  5'- cCGCGAugG-GCCUcGGCCUgcuGGGCACg -3'
miRNA:   3'- cGCGCUugCuUGGAcUCGGG---CCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 10769 0.69 0.469904
Target:  5'- aUGCGGaagcuGCcGACCUGGGCCgGGACu- -3'
miRNA:   3'- cGCGCU-----UGcUUGGACUCGGgCCUGug -5'
7354 3' -56.4 NC_001900.1 + 11351 0.68 0.521315
Target:  5'- uGCGuCGAGCGGAUCUacgagGAGCCUgucgaGGGCGa -3'
miRNA:   3'- -CGC-GCUUGCUUGGA-----CUCGGG-----CCUGUg -5'
7354 3' -56.4 NC_001900.1 + 12586 0.71 0.333594
Target:  5'- cCGUGAACG-GCCUGAGCCUgcuGGugAa -3'
miRNA:   3'- cGCGCUUGCuUGGACUCGGG---CCugUg -5'
7354 3' -56.4 NC_001900.1 + 12865 0.69 0.45993
Target:  5'- aCGUGAcggaucagGCGAcCCUGAaCCUGGGCACc -3'
miRNA:   3'- cGCGCU--------UGCUuGGACUcGGGCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 13117 0.67 0.553194
Target:  5'- uGCGCGAcgaguaccucuACGAGCCgccGAuCCCGGAg-- -3'
miRNA:   3'- -CGCGCU-----------UGCUUGGa--CUcGGGCCUgug -5'
7354 3' -56.4 NC_001900.1 + 13829 0.66 0.618413
Target:  5'- -aGCGggUGGACCgagaAGCCCucGGAcCACu -3'
miRNA:   3'- cgCGCuuGCUUGGac--UCGGG--CCU-GUG- -5'
7354 3' -56.4 NC_001900.1 + 14490 0.67 0.563955
Target:  5'- -gGUGGACGAugCguucugGAGCCUGGcCAa -3'
miRNA:   3'- cgCGCUUGCUugGa-----CUCGGGCCuGUg -5'
7354 3' -56.4 NC_001900.1 + 15559 0.66 0.618413
Target:  5'- cGgGCGGugGAGCCUGA-CCCaaacuuGACAg -3'
miRNA:   3'- -CgCGCUugCUUGGACUcGGGc-----CUGUg -5'
7354 3' -56.4 NC_001900.1 + 18532 0.66 0.650205
Target:  5'- cGCGgGGAUGGACacgGucuucacGGCCCGGAUcuGCa -3'
miRNA:   3'- -CGCgCUUGCUUGga-C-------UCGGGCCUG--UG- -5'
7354 3' -56.4 NC_001900.1 + 19892 0.7 0.411835
Target:  5'- gGCGCGGAUGAACg-GuGUCCGGuucCGCa -3'
miRNA:   3'- -CGCGCUUGCUUGgaCuCGGGCCu--GUG- -5'
7354 3' -56.4 NC_001900.1 + 20105 0.68 0.521315
Target:  5'- aGCGCGAGCagGAGCgaCUGaAGCCacCGGACGu -3'
miRNA:   3'- -CGCGCUUG--CUUG--GAC-UCGG--GCCUGUg -5'
7354 3' -56.4 NC_001900.1 + 21945 0.68 0.521315
Target:  5'- uCGCG-AUGAGCCgUGAGgCUGGGCGu -3'
miRNA:   3'- cGCGCuUGCUUGG-ACUCgGGCCUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.