miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7354 3' -56.4 NC_001900.1 + 26702 0.7 0.402595
Target:  5'- cGCGaccuuaGAGCGAcacuaaugACCUGcauuuaugcuGCCCGGAUACa -3'
miRNA:   3'- -CGCg-----CUUGCU--------UGGACu---------CGGGCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 15559 0.66 0.618413
Target:  5'- cGgGCGGugGAGCCUGA-CCCaaacuuGACAg -3'
miRNA:   3'- -CgCGCUugCUUGGACUcGGGc-----CUGUg -5'
7354 3' -56.4 NC_001900.1 + 47480 0.66 0.640342
Target:  5'- aCGCGAAUGAugUUGGuGCCuCGGcAgACg -3'
miRNA:   3'- cGCGCUUGCUugGACU-CGG-GCC-UgUG- -5'
7354 3' -56.4 NC_001900.1 + 1502 0.66 0.641439
Target:  5'- gGCGaUGGACGAcgccauguccaagauCCUGAGCCa-GGCGCa -3'
miRNA:   3'- -CGC-GCUUGCUu--------------GGACUCGGgcCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 10769 0.69 0.469904
Target:  5'- aUGCGGaagcuGCcGACCUGGGCCgGGACu- -3'
miRNA:   3'- cGCGCU-----UGcUUGGACUCGGgCCUGug -5'
7354 3' -56.4 NC_001900.1 + 39939 1.1 0.000559
Target:  5'- aGCGCGAACGAACCUGAGCCCGGACACc -3'
miRNA:   3'- -CGCGCUUGCUUGGACUCGGGCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 41988 0.75 0.195086
Target:  5'- uCGCGAugGAGCgUGAGgaccauCUCGGGCACa -3'
miRNA:   3'- cGCGCUugCUUGgACUC------GGGCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 39441 0.72 0.287793
Target:  5'- gGUGCGuGGCGcACCgUGGGCCgGGAUACu -3'
miRNA:   3'- -CGCGC-UUGCuUGG-ACUCGGgCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 12586 0.71 0.333594
Target:  5'- cCGUGAACG-GCCUGAGCCUgcuGGugAa -3'
miRNA:   3'- cGCGCUUGCuUGGACUCGGG---CCugUg -5'
7354 3' -56.4 NC_001900.1 + 1173 0.67 0.57477
Target:  5'- gGCgGCGGugGAGCCgccgGAagcgGCCgGGGCGg -3'
miRNA:   3'- -CG-CGCUugCUUGGa---CU----CGGgCCUGUg -5'
7354 3' -56.4 NC_001900.1 + 20105 0.68 0.521315
Target:  5'- aGCGCGAGCagGAGCgaCUGaAGCCacCGGACGu -3'
miRNA:   3'- -CGCGCUUG--CUUG--GAC-UCGG--GCCUGUg -5'
7354 3' -56.4 NC_001900.1 + 10416 0.68 0.510844
Target:  5'- cGCGUGAGCGGGCUc--GCaaGGACAUg -3'
miRNA:   3'- -CGCGCUUGCUUGGacuCGggCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 19892 0.7 0.411835
Target:  5'- gGCGCGGAUGAACg-GuGUCCGGuucCGCa -3'
miRNA:   3'- -CGCGCUUGCUUGgaCuCGGGCCu--GUG- -5'
7354 3' -56.4 NC_001900.1 + 27454 0.68 0.531867
Target:  5'- aCGCGGAUcAGCCUGGGgCCGaGccGCACg -3'
miRNA:   3'- cGCGCUUGcUUGGACUCgGGC-C--UGUG- -5'
7354 3' -56.4 NC_001900.1 + 43812 0.69 0.440325
Target:  5'- aGCGCGAGCGAACCgGAacGCCgcuucuggcguCGGGaACg -3'
miRNA:   3'- -CGCGCUUGCUUGGaCU--CGG-----------GCCUgUG- -5'
7354 3' -56.4 NC_001900.1 + 44743 0.68 0.490175
Target:  5'- --cCGAGCGAGCUUGuacGCCauCGGGCACu -3'
miRNA:   3'- cgcGCUUGCUUGGACu--CGG--GCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 1412 0.67 0.542496
Target:  5'- -aGCGAagAgGGACCaGAuGCUCGGAUACg -3'
miRNA:   3'- cgCGCU--UgCUUGGaCU-CGGGCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 24727 0.66 0.640342
Target:  5'- gGCGCuGGugGuACCgcaGGGCCUGGuuACa -3'
miRNA:   3'- -CGCG-CUugCuUGGa--CUCGGGCCugUG- -5'
7354 3' -56.4 NC_001900.1 + 12865 0.69 0.45993
Target:  5'- aCGUGAcggaucagGCGAcCCUGAaCCUGGGCACc -3'
miRNA:   3'- cGCGCU--------UGCUuGGACUcGGGCCUGUG- -5'
7354 3' -56.4 NC_001900.1 + 34900 0.68 0.479987
Target:  5'- -aGCuuGCGAcCCgccGCCCGGACGCg -3'
miRNA:   3'- cgCGcuUGCUuGGacuCGGGCCUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.