Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 18532 | 0.66 | 0.650205 |
Target: 5'- cGCGgGGAUGGACacgGucuucacGGCCCGGAUcuGCa -3' miRNA: 3'- -CGCgCUUGCUUGga-C-------UCGGGCCUG--UG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 1053 | 0.72 | 0.287793 |
Target: 5'- gGCGCGAugGAAUgaucgCUGAGCUauggucuggCGGAUACc -3' miRNA: 3'- -CGCGCUugCUUG-----GACUCGG---------GCCUGUG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 32644 | 0.7 | 0.381849 |
Target: 5'- cGCgGCGAACGAACCUGGcuucggcguuGUCUucucaaagucgucgGGACGCg -3' miRNA: 3'- -CG-CGCUUGCUUGGACU----------CGGG--------------CCUGUG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 25826 | 0.7 | 0.384514 |
Target: 5'- uGUGCGuccaGGCGAGCCUGcAGCUCGG-CGa -3' miRNA: 3'- -CGCGC----UUGCUUGGAC-UCGGGCCuGUg -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 34143 | 0.7 | 0.393487 |
Target: 5'- uGUGCGGAcgcCGAGCCUGAucagGCCCuGGAUuCg -3' miRNA: 3'- -CGCGCUU---GCUUGGACU----CGGG-CCUGuG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 47530 | 0.7 | 0.410905 |
Target: 5'- cGUGCGGugGAccACCUGcGCCUggcucaggaucuuGGACAUg -3' miRNA: 3'- -CGCGCUugCU--UGGACuCGGG-------------CCUGUG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 7918 | 0.69 | 0.450069 |
Target: 5'- -gGCGAuCGAcCCggaGAGCCCGGAUcCg -3' miRNA: 3'- cgCGCUuGCUuGGa--CUCGGGCCUGuG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 28128 | 0.69 | 0.450069 |
Target: 5'- cGCcCGGACGAACCcggUGAGCCaGGAgcCGCc -3' miRNA: 3'- -CGcGCUUGCUUGG---ACUCGGgCCU--GUG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 23233 | 0.68 | 0.500463 |
Target: 5'- gGCGUGGACcAGCCUGcGGUUCGGugAg -3' miRNA: 3'- -CGCGCUUGcUUGGAC-UCGGGCCugUg -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 21945 | 0.68 | 0.521315 |
Target: 5'- uCGCG-AUGAGCCgUGAGgCUGGGCGu -3' miRNA: 3'- cGCGCuUGCUUGG-ACUCgGGCCUGUg -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 13829 | 0.66 | 0.618413 |
Target: 5'- -aGCGggUGGACCgagaAGCCCucGGAcCACu -3' miRNA: 3'- cgCGCuuGCUUGGac--UCGGG--CCU-GUG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 14490 | 0.67 | 0.563955 |
Target: 5'- -gGUGGACGAugCguucugGAGCCUGGcCAa -3' miRNA: 3'- cgCGCUUGCUugGa-----CUCGGGCCuGUg -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 13117 | 0.67 | 0.553194 |
Target: 5'- uGCGCGAcgaguaccucuACGAGCCgccGAuCCCGGAg-- -3' miRNA: 3'- -CGCGCU-----------UGCUUGGa--CUcGGGCCUgug -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 7095 | 0.67 | 0.542496 |
Target: 5'- uCGCGAGuCGGacgGCUUcGGCCCGGACuCg -3' miRNA: 3'- cGCGCUU-GCU---UGGAcUCGGGCCUGuG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 31793 | 0.68 | 0.521315 |
Target: 5'- uGCGUGccggucgaGAUGAccgGCCcGAGCCCGGugAa -3' miRNA: 3'- -CGCGC--------UUGCU---UGGaCUCGGGCCugUg -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 11351 | 0.68 | 0.521315 |
Target: 5'- uGCGuCGAGCGGAUCUacgagGAGCCUgucgaGGGCGa -3' miRNA: 3'- -CGC-GCUUGCUUGGA-----CUCGGG-----CCUGUg -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 1502 | 0.66 | 0.641439 |
Target: 5'- gGCGaUGGACGAcgccauguccaagauCCUGAGCCa-GGCGCa -3' miRNA: 3'- -CGC-GCUUGCUu--------------GGACUCGGgcCUGUG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 41988 | 0.75 | 0.195086 |
Target: 5'- uCGCGAugGAGCgUGAGgaccauCUCGGGCACa -3' miRNA: 3'- cGCGCUugCUUGgACUC------GGGCCUGUG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 39441 | 0.72 | 0.287793 |
Target: 5'- gGUGCGuGGCGcACCgUGGGCCgGGAUACu -3' miRNA: 3'- -CGCGC-UUGCuUGG-ACUCGGgCCUGUG- -5' |
|||||||
7354 | 3' | -56.4 | NC_001900.1 | + | 12586 | 0.71 | 0.333594 |
Target: 5'- cCGUGAACG-GCCUGAGCCUgcuGGugAa -3' miRNA: 3'- cGCGCUUGCuUGGACUCGGG---CCugUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home