Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7356 | 5' | -60.2 | NC_001900.1 | + | 28986 | 0.69 | 0.284861 |
Target: 5'- cAGCGCCGCaguUGGAUCuuCCGCCAGa- -3' miRNA: 3'- -UCGCGGCGgc-ACUUGGu-GGUGGUCcg -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 28021 | 0.69 | 0.284861 |
Target: 5'- cGgGCCGguguaaCCGggugcgGAGCCGCCACCgucacAGGCc -3' miRNA: 3'- uCgCGGC------GGCa-----CUUGGUGGUGG-----UCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 34773 | 0.69 | 0.271114 |
Target: 5'- cAGCGCacCGCCGUccucGAACCugUACUgcucgccuucgcGGGCa -3' miRNA: 3'- -UCGCG--GCGGCA----CUUGGugGUGG------------UCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 19483 | 0.69 | 0.264442 |
Target: 5'- cGGCgGCUGCCgGUGGACCGCUcucggacguACUcGGCg -3' miRNA: 3'- -UCG-CGGCGG-CACUUGGUGG---------UGGuCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 43149 | 0.69 | 0.264442 |
Target: 5'- gGGUGCCGCC-UGAGCUgauguCCcCCAGGa -3' miRNA: 3'- -UCGCGGCGGcACUUGGu----GGuGGUCCg -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 25730 | 0.7 | 0.245227 |
Target: 5'- uAGcCGCCGCCGguauaGAACUcgGCCcaGCCGGGg -3' miRNA: 3'- -UC-GCGGCGGCa----CUUGG--UGG--UGGUCCg -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 24102 | 0.7 | 0.244607 |
Target: 5'- uGCGCCGCC-------GCCACCAGGUg -3' miRNA: 3'- uCGCGGCGGcacuuggUGGUGGUCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 10631 | 0.7 | 0.239084 |
Target: 5'- cAGCgGCCcagGCCGUG-AUCACUGCgGGGCu -3' miRNA: 3'- -UCG-CGG---CGGCACuUGGUGGUGgUCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 43523 | 0.7 | 0.239084 |
Target: 5'- aGGCcCCuGCCGUGAGCC--CACCGGGa -3' miRNA: 3'- -UCGcGG-CGGCACUUGGugGUGGUCCg -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 14280 | 0.7 | 0.239084 |
Target: 5'- cGGCGucacCCGCCGUgcucGAACCaACCugGCCAGaGCg -3' miRNA: 3'- -UCGC----GGCGGCA----CUUGG-UGG--UGGUC-CG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 24414 | 0.7 | 0.238477 |
Target: 5'- gAGCGUgGCCGUcacccagGAACCGCCgaaGCCGccuuGGCc -3' miRNA: 3'- -UCGCGgCGGCA-------CUUGGUGG---UGGU----CCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 45026 | 0.7 | 0.23307 |
Target: 5'- -aCGCCGUcgauCGUGAACgGCCAgauggUCAGGCg -3' miRNA: 3'- ucGCGGCG----GCACUUGgUGGU-----GGUCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 45903 | 0.7 | 0.23307 |
Target: 5'- uAGCGgaaCCGCUcaGAACC-CCGCCAGGg -3' miRNA: 3'- -UCGC---GGCGGcaCUUGGuGGUGGUCCg -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 41103 | 0.7 | 0.227184 |
Target: 5'- -uCGCgGCCGUGGACCuuggucucgAUCACCcgAGGCu -3' miRNA: 3'- ucGCGgCGGCACUUGG---------UGGUGG--UCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 11040 | 0.7 | 0.227184 |
Target: 5'- aAGgGCUgGgCGaGggUCGCCACCGGGCg -3' miRNA: 3'- -UCgCGG-CgGCaCuuGGUGGUGGUCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 20223 | 0.7 | 0.221425 |
Target: 5'- cGGCGUagccaCGCUGcagcucucgcUGAGCCACUACCuGGCc -3' miRNA: 3'- -UCGCG-----GCGGC----------ACUUGGUGGUGGuCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 5296 | 0.7 | 0.221425 |
Target: 5'- uGCuGCCgGCCGUGcguGACgGCCucauCCAGGCc -3' miRNA: 3'- uCG-CGG-CGGCAC---UUGgUGGu---GGUCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 24552 | 0.7 | 0.221425 |
Target: 5'- cGCGCCgaccGCCGUGAccggagUCAgCACCGGGUc -3' miRNA: 3'- uCGCGG----CGGCACUu-----GGUgGUGGUCCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 9181 | 0.7 | 0.221425 |
Target: 5'- cGCuGCUGCaCGcGAugUACCGCCAcGGCg -3' miRNA: 3'- uCG-CGGCG-GCaCUugGUGGUGGU-CCG- -5' |
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7356 | 5' | -60.2 | NC_001900.1 | + | 68 | 0.71 | 0.21579 |
Target: 5'- gAGCGCCucgcccaggcGCUGUGAGCCACCA--GGaGCc -3' miRNA: 3'- -UCGCGG----------CGGCACUUGGUGGUggUC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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