miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 30997 0.67 0.370261
Target:  5'- cGCGCCaGCC-UGcACCACggccgcaGCCAGGUu -3'
miRNA:   3'- uCGCGG-CGGcACuUGGUGg------UGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 16753 0.67 0.370261
Target:  5'- aAGgGCgGCUuccUGAGCCGCCugCucGGCg -3'
miRNA:   3'- -UCgCGgCGGc--ACUUGGUGGugGu-CCG- -5'
7356 5' -60.2 NC_001900.1 + 43602 0.67 0.370261
Target:  5'- cGGUGCauCCGcaGGACCGCCGCCGucucaugcGGCg -3'
miRNA:   3'- -UCGCGgcGGCa-CUUGGUGGUGGU--------CCG- -5'
7356 5' -60.2 NC_001900.1 + 25512 0.67 0.370261
Target:  5'- cGCGCaGCCacaaccggauguGUGAGCCGCC-CCggaagAGGCc -3'
miRNA:   3'- uCGCGgCGG------------CACUUGGUGGuGG-----UCCG- -5'
7356 5' -60.2 NC_001900.1 + 39919 0.67 0.370261
Target:  5'- cGgGCUGUCaucgGAcgGCCACCACCcGGCc -3'
miRNA:   3'- uCgCGGCGGca--CU--UGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 2533 0.67 0.359307
Target:  5'- aAGCGauCUGCCGUGucuGCCacggcaagaagucaGCCGCUgaGGGCg -3'
miRNA:   3'- -UCGC--GGCGGCACu--UGG--------------UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 34103 0.67 0.356811
Target:  5'- cAGCgGCCaucucccgcaagaaaGCgGUGAACCGCUugucuCCGGGUg -3'
miRNA:   3'- -UCG-CGG---------------CGgCACUUGGUGGu----GGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 37400 0.67 0.353503
Target:  5'- aGGuCGCCGauGUGGACgACCucgUCGGGCu -3'
miRNA:   3'- -UC-GCGGCggCACUUGgUGGu--GGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 29565 0.67 0.345327
Target:  5'- cAGCGCCGaguaCGUccgaGAGCgGuCCACC-GGCa -3'
miRNA:   3'- -UCGCGGCg---GCA----CUUGgU-GGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 36467 0.67 0.345327
Target:  5'- -uUGCCGUCGU---UCACCAgCAGGCu -3'
miRNA:   3'- ucGCGGCGGCAcuuGGUGGUgGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 34026 0.68 0.337288
Target:  5'- cGGgGCCaCCGUGcgcuucuuGACCGgCACCGGGa -3'
miRNA:   3'- -UCgCGGcGGCAC--------UUGGUgGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 25251 0.68 0.329386
Target:  5'- cAGCGCCgauaGCCGaccgGAGCCcgucgucggACCACaGGGCc -3'
miRNA:   3'- -UCGCGG----CGGCa---CUUGG---------UGGUGgUCCG- -5'
7356 5' -60.2 NC_001900.1 + 37431 0.68 0.321621
Target:  5'- gGGUGUCGCCGaUGAACCcgACCACa--GCc -3'
miRNA:   3'- -UCGCGGCGGC-ACUUGG--UGGUGgucCG- -5'
7356 5' -60.2 NC_001900.1 + 7822 0.68 0.320852
Target:  5'- cGCGCCccGCagCGUGGAUCACCgucgcggccgucaGCCAGGa -3'
miRNA:   3'- uCGCGG--CG--GCACUUGGUGG-------------UGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 19240 0.68 0.313994
Target:  5'- cGCGCUGCCuucggGGACCACauCACCAaGGa -3'
miRNA:   3'- uCGCGGCGGca---CUUGGUG--GUGGU-CCg -5'
7356 5' -60.2 NC_001900.1 + 33686 0.68 0.306505
Target:  5'- aGGCGCauguCGCCGUcuucGAUCACgACCAGGa -3'
miRNA:   3'- -UCGCG----GCGGCAc---UUGGUGgUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 21266 0.68 0.299153
Target:  5'- cGGCGCgGUCgGUGGcgcgaucgaccuGCCcCCGCUGGGCg -3'
miRNA:   3'- -UCGCGgCGG-CACU------------UGGuGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 42362 0.68 0.299153
Target:  5'- gGGUaGuuGCCGaUGGGCUGCCACC-GGUa -3'
miRNA:   3'- -UCG-CggCGGC-ACUUGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 47829 0.69 0.291939
Target:  5'- cGCuGCCGCCGccaccGAguaCACCACCGGuGCc -3'
miRNA:   3'- uCG-CGGCGGCa----CUug-GUGGUGGUC-CG- -5'
7356 5' -60.2 NC_001900.1 + 47439 0.69 0.284861
Target:  5'- cGCGCUGaCCGgggGugUCGCCACC-GGCc -3'
miRNA:   3'- uCGCGGC-GGCa--CuuGGUGGUGGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.