miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 14280 0.7 0.239084
Target:  5'- cGGCGucacCCGCCGUgcucGAACCaACCugGCCAGaGCg -3'
miRNA:   3'- -UCGC----GGCGGCA----CUUGG-UGG--UGGUC-CG- -5'
7356 5' -60.2 NC_001900.1 + 43523 0.7 0.239084
Target:  5'- aGGCcCCuGCCGUGAGCC--CACCGGGa -3'
miRNA:   3'- -UCGcGG-CGGCACUUGGugGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 10631 0.7 0.239084
Target:  5'- cAGCgGCCcagGCCGUG-AUCACUGCgGGGCu -3'
miRNA:   3'- -UCG-CGG---CGGCACuUGGUGGUGgUCCG- -5'
7356 5' -60.2 NC_001900.1 + 24102 0.7 0.244607
Target:  5'- uGCGCCGCC-------GCCACCAGGUg -3'
miRNA:   3'- uCGCGGCGGcacuuggUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 25730 0.7 0.245227
Target:  5'- uAGcCGCCGCCGguauaGAACUcgGCCcaGCCGGGg -3'
miRNA:   3'- -UC-GCGGCGGCa----CUUGG--UGG--UGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 19483 0.69 0.264442
Target:  5'- cGGCgGCUGCCgGUGGACCGCUcucggacguACUcGGCg -3'
miRNA:   3'- -UCG-CGGCGG-CACUUGGUGG---------UGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 43149 0.69 0.264442
Target:  5'- gGGUGCCGCC-UGAGCUgauguCCcCCAGGa -3'
miRNA:   3'- -UCGCGGCGGcACUUGGu----GGuGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 34773 0.69 0.271114
Target:  5'- cAGCGCacCGCCGUccucGAACCugUACUgcucgccuucgcGGGCa -3'
miRNA:   3'- -UCGCG--GCGGCA----CUUGGugGUGG------------UCCG- -5'
7356 5' -60.2 NC_001900.1 + 28021 0.69 0.284861
Target:  5'- cGgGCCGguguaaCCGggugcgGAGCCGCCACCgucacAGGCc -3'
miRNA:   3'- uCgCGGC------GGCa-----CUUGGUGGUGG-----UCCG- -5'
7356 5' -60.2 NC_001900.1 + 47439 0.69 0.284861
Target:  5'- cGCGCUGaCCGgggGugUCGCCACC-GGCc -3'
miRNA:   3'- uCGCGGC-GGCa--CuuGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 28986 0.69 0.284861
Target:  5'- cAGCGCCGCaguUGGAUCuuCCGCCAGa- -3'
miRNA:   3'- -UCGCGGCGgc-ACUUGGu-GGUGGUCcg -5'
7356 5' -60.2 NC_001900.1 + 47829 0.69 0.291939
Target:  5'- cGCuGCCGCCGccaccGAguaCACCACCGGuGCc -3'
miRNA:   3'- uCG-CGGCGGCa----CUug-GUGGUGGUC-CG- -5'
7356 5' -60.2 NC_001900.1 + 42362 0.68 0.299153
Target:  5'- gGGUaGuuGCCGaUGGGCUGCCACC-GGUa -3'
miRNA:   3'- -UCG-CggCGGC-ACUUGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 21266 0.68 0.299153
Target:  5'- cGGCGCgGUCgGUGGcgcgaucgaccuGCCcCCGCUGGGCg -3'
miRNA:   3'- -UCGCGgCGG-CACU------------UGGuGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 33686 0.68 0.306505
Target:  5'- aGGCGCauguCGCCGUcuucGAUCACgACCAGGa -3'
miRNA:   3'- -UCGCG----GCGGCAc---UUGGUGgUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 19240 0.68 0.313994
Target:  5'- cGCGCUGCCuucggGGACCACauCACCAaGGa -3'
miRNA:   3'- uCGCGGCGGca---CUUGGUG--GUGGU-CCg -5'
7356 5' -60.2 NC_001900.1 + 7822 0.68 0.320852
Target:  5'- cGCGCCccGCagCGUGGAUCACCgucgcggccgucaGCCAGGa -3'
miRNA:   3'- uCGCGG--CG--GCACUUGGUGG-------------UGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 37431 0.68 0.321621
Target:  5'- gGGUGUCGCCGaUGAACCcgACCACa--GCc -3'
miRNA:   3'- -UCGCGGCGGC-ACUUGG--UGGUGgucCG- -5'
7356 5' -60.2 NC_001900.1 + 25251 0.68 0.329386
Target:  5'- cAGCGCCgauaGCCGaccgGAGCCcgucgucggACCACaGGGCc -3'
miRNA:   3'- -UCGCGG----CGGCa---CUUGG---------UGGUGgUCCG- -5'
7356 5' -60.2 NC_001900.1 + 34026 0.68 0.337288
Target:  5'- cGGgGCCaCCGUGcgcuucuuGACCGgCACCGGGa -3'
miRNA:   3'- -UCgCGGcGGCAC--------UUGGUgGUGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.