miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 40762 1.1 0.000238
Target:  5'- gAGCGCCGCCGUGAACCACCACCAGGCc -3'
miRNA:   3'- -UCGCGGCGGCACUUGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 33063 0.73 0.145112
Target:  5'- -cCGCCGCCGcu-ACCGCCGCCAccggaguucGGCu -3'
miRNA:   3'- ucGCGGCGGCacuUGGUGGUGGU---------CCG- -5'
7356 5' -60.2 NC_001900.1 + 47522 0.73 0.145112
Target:  5'- aGGUGCUucguGCgGUGGACCACCugcGCCuGGCu -3'
miRNA:   3'- -UCGCGG----CGgCACUUGGUGG---UGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 18984 0.72 0.161578
Target:  5'- cGCGCUgucgGUCGUGGGCCGagcuugacauCCACCAGGa -3'
miRNA:   3'- uCGCGG----CGGCACUUGGU----------GGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 36610 0.72 0.170427
Target:  5'- cGCGCCGUCGaacGCCAUCGCgaAGGCg -3'
miRNA:   3'- uCGCGGCGGCacuUGGUGGUGg-UCCG- -5'
7356 5' -60.2 NC_001900.1 + 20328 0.72 0.179233
Target:  5'- aGGCGCUcgauggaGCgGgaugaUGGACCACUACCGGGUg -3'
miRNA:   3'- -UCGCGG-------CGgC-----ACUUGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 18065 0.71 0.189434
Target:  5'- uGCcUCGCCGUcGAcACCgaaACCACCGGGCu -3'
miRNA:   3'- uCGcGGCGGCA-CU-UGG---UGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 40926 0.71 0.19962
Target:  5'- cGCGCCguagacGCCGUuGAUgAUCGCCAGGUa -3'
miRNA:   3'- uCGCGG------CGGCAcUUGgUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 40566 0.71 0.204889
Target:  5'- uGGCGCgUGCCGacUGAcCUACCgagagggaacGCCAGGCa -3'
miRNA:   3'- -UCGCG-GCGGC--ACUuGGUGG----------UGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 17641 0.71 0.210279
Target:  5'- cGCGCUGCCGcgugaUGAGgCGCUACCgaucgaugugcAGGCu -3'
miRNA:   3'- uCGCGGCGGC-----ACUUgGUGGUGG-----------UCCG- -5'
7356 5' -60.2 NC_001900.1 + 68 0.71 0.21579
Target:  5'- gAGCGCCucgcccaggcGCUGUGAGCCACCA--GGaGCc -3'
miRNA:   3'- -UCGCGG----------CGGCACUUGGUGGUggUC-CG- -5'
7356 5' -60.2 NC_001900.1 + 20223 0.7 0.221425
Target:  5'- cGGCGUagccaCGCUGcagcucucgcUGAGCCACUACCuGGCc -3'
miRNA:   3'- -UCGCG-----GCGGC----------ACUUGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 24552 0.7 0.221425
Target:  5'- cGCGCCgaccGCCGUGAccggagUCAgCACCGGGUc -3'
miRNA:   3'- uCGCGG----CGGCACUu-----GGUgGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 9181 0.7 0.221425
Target:  5'- cGCuGCUGCaCGcGAugUACCGCCAcGGCg -3'
miRNA:   3'- uCG-CGGCG-GCaCUugGUGGUGGU-CCG- -5'
7356 5' -60.2 NC_001900.1 + 5296 0.7 0.221425
Target:  5'- uGCuGCCgGCCGUGcguGACgGCCucauCCAGGCc -3'
miRNA:   3'- uCG-CGG-CGGCAC---UUGgUGGu---GGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 41103 0.7 0.227184
Target:  5'- -uCGCgGCCGUGGACCuuggucucgAUCACCcgAGGCu -3'
miRNA:   3'- ucGCGgCGGCACUUGG---------UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 11040 0.7 0.227184
Target:  5'- aAGgGCUgGgCGaGggUCGCCACCGGGCg -3'
miRNA:   3'- -UCgCGG-CgGCaCuuGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 45903 0.7 0.23307
Target:  5'- uAGCGgaaCCGCUcaGAACC-CCGCCAGGg -3'
miRNA:   3'- -UCGC---GGCGGcaCUUGGuGGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 45026 0.7 0.23307
Target:  5'- -aCGCCGUcgauCGUGAACgGCCAgauggUCAGGCg -3'
miRNA:   3'- ucGCGGCG----GCACUUGgUGGU-----GGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 24414 0.7 0.238477
Target:  5'- gAGCGUgGCCGUcacccagGAACCGCCgaaGCCGccuuGGCc -3'
miRNA:   3'- -UCGCGgCGGCA-------CUUGGUGG---UGGU----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.