miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 68 0.71 0.21579
Target:  5'- gAGCGCCucgcccaggcGCUGUGAGCCACCA--GGaGCc -3'
miRNA:   3'- -UCGCGG----------CGGCACUUGGUGGUggUC-CG- -5'
7356 5' -60.2 NC_001900.1 + 1605 0.67 0.378842
Target:  5'- cGCGuCCGCUGacuUGAcaGCCACCGaaGGGUu -3'
miRNA:   3'- uCGC-GGCGGC---ACU--UGGUGGUggUCCG- -5'
7356 5' -60.2 NC_001900.1 + 2533 0.67 0.359307
Target:  5'- aAGCGauCUGCCGUGucuGCCacggcaagaagucaGCCGCUgaGGGCg -3'
miRNA:   3'- -UCGC--GGCGGCACu--UGG--------------UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 2599 0.66 0.442503
Target:  5'- cGGCGauuaCGCCGcgugGGACUgcucacggugcgGCCAUgAGGCg -3'
miRNA:   3'- -UCGCg---GCGGCa---CUUGG------------UGGUGgUCCG- -5'
7356 5' -60.2 NC_001900.1 + 3393 0.66 0.433039
Target:  5'- aGGCcgGCCgGCCGUGAGCgugugCGCCGugaAGGCa -3'
miRNA:   3'- -UCG--CGG-CGGCACUUG-----GUGGUgg-UCCG- -5'
7356 5' -60.2 NC_001900.1 + 3398 0.67 0.387554
Target:  5'- cGCGCUGCaccagGUGua-CAUCACCGGGg -3'
miRNA:   3'- uCGCGGCGg----CACuugGUGGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 4377 0.66 0.414469
Target:  5'- uGGCuGCCGCaggGGACCGCguuccacgcuguCGCCgAGGCg -3'
miRNA:   3'- -UCG-CGGCGgcaCUUGGUG------------GUGG-UCCG- -5'
7356 5' -60.2 NC_001900.1 + 5296 0.7 0.221425
Target:  5'- uGCuGCCgGCCGUGcguGACgGCCucauCCAGGCc -3'
miRNA:   3'- uCG-CGG-CGGCAC---UUGgUGGu---GGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 7822 0.68 0.320852
Target:  5'- cGCGCCccGCagCGUGGAUCACCgucgcggccgucaGCCAGGa -3'
miRNA:   3'- uCGCGG--CG--GCACUUGGUGG-------------UGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 9181 0.7 0.221425
Target:  5'- cGCuGCUGCaCGcGAugUACCGCCAcGGCg -3'
miRNA:   3'- uCG-CGGCG-GCaCUugGUGGUGGU-CCG- -5'
7356 5' -60.2 NC_001900.1 + 10631 0.7 0.239084
Target:  5'- cAGCgGCCcagGCCGUG-AUCACUGCgGGGCu -3'
miRNA:   3'- -UCG-CGG---CGGCACuUGGUGGUGgUCCG- -5'
7356 5' -60.2 NC_001900.1 + 11040 0.7 0.227184
Target:  5'- aAGgGCUgGgCGaGggUCGCCACCGGGCg -3'
miRNA:   3'- -UCgCGG-CgGCaCuuGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 12913 0.66 0.423693
Target:  5'- aAGCGa-GCCGUGAAgUCGCuCACCGaGCa -3'
miRNA:   3'- -UCGCggCGGCACUU-GGUG-GUGGUcCG- -5'
7356 5' -60.2 NC_001900.1 + 14084 0.66 0.402665
Target:  5'- gGGCaGCCGCCuUGGucgaccugaucgacAcCCACUACCGGGa -3'
miRNA:   3'- -UCG-CGGCGGcACU--------------U-GGUGGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 14143 0.66 0.423693
Target:  5'- gAGCGCgucuaCGaCGUGucCCGCguCCGGGCg -3'
miRNA:   3'- -UCGCG-----GCgGCACuuGGUGguGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 14280 0.7 0.239084
Target:  5'- cGGCGucacCCGCCGUgcucGAACCaACCugGCCAGaGCg -3'
miRNA:   3'- -UCGC----GGCGGCA----CUUGG-UGG--UGGUC-CG- -5'
7356 5' -60.2 NC_001900.1 + 16753 0.67 0.370261
Target:  5'- aAGgGCgGCUuccUGAGCCGCCugCucGGCg -3'
miRNA:   3'- -UCgCGgCGGc--ACUUGGUGGugGu-CCG- -5'
7356 5' -60.2 NC_001900.1 + 16817 0.66 0.442503
Target:  5'- -uCGCCgaugGUCGUcacGGGCaACCACCGGGCg -3'
miRNA:   3'- ucGCGG----CGGCA---CUUGgUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 17641 0.71 0.210279
Target:  5'- cGCGCUGCCGcgugaUGAGgCGCUACCgaucgaugugcAGGCu -3'
miRNA:   3'- uCGCGGCGGC-----ACUUgGUGGUGG-----------UCCG- -5'
7356 5' -60.2 NC_001900.1 + 18065 0.71 0.189434
Target:  5'- uGCcUCGCCGUcGAcACCgaaACCACCGGGCu -3'
miRNA:   3'- uCGcGGCGGCA-CU-UGG---UGGUGGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.