miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 47863 0.66 0.40537
Target:  5'- uGCGuuGCCGgu-GCCuaaACCGCCccGGCc -3'
miRNA:   3'- uCGCggCGGCacuUGG---UGGUGGu-CCG- -5'
7356 5' -60.2 NC_001900.1 + 47829 0.69 0.291939
Target:  5'- cGCuGCCGCCGccaccGAguaCACCACCGGuGCc -3'
miRNA:   3'- uCG-CGGCGGCa----CUug-GUGGUGGUC-CG- -5'
7356 5' -60.2 NC_001900.1 + 47522 0.73 0.145112
Target:  5'- aGGUGCUucguGCgGUGGACCACCugcGCCuGGCu -3'
miRNA:   3'- -UCGCGG----CGgCACUUGGUGG---UGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 47439 0.69 0.284861
Target:  5'- cGCGCUGaCCGgggGugUCGCCACC-GGCc -3'
miRNA:   3'- uCGCGGC-GGCa--CuuGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 46620 0.66 0.413554
Target:  5'- cGCaGCCgggGCCGUcGACCucacacaGCCACCcGGCa -3'
miRNA:   3'- uCG-CGG---CGGCAcUUGG-------UGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 45903 0.7 0.23307
Target:  5'- uAGCGgaaCCGCUcaGAACC-CCGCCAGGg -3'
miRNA:   3'- -UCGC---GGCGGcaCUUGGuGGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 45026 0.7 0.23307
Target:  5'- -aCGCCGUcgauCGUGAACgGCCAgauggUCAGGCg -3'
miRNA:   3'- ucGCGGCG----GCACUUGgUGGU-----GGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 44068 0.67 0.378842
Target:  5'- -cCGCCGCCGUGcuggagcccgacGAgCAUgACCGGGg -3'
miRNA:   3'- ucGCGGCGGCAC------------UUgGUGgUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 43929 0.66 0.442503
Target:  5'- uGCGCCGUCGUaGAGgaaCACCcCCAcGCc -3'
miRNA:   3'- uCGCGGCGGCA-CUUg--GUGGuGGUcCG- -5'
7356 5' -60.2 NC_001900.1 + 43602 0.67 0.370261
Target:  5'- cGGUGCauCCGcaGGACCGCCGCCGucucaugcGGCg -3'
miRNA:   3'- -UCGCGgcGGCa-CUUGGUGGUGGU--------CCG- -5'
7356 5' -60.2 NC_001900.1 + 43523 0.7 0.239084
Target:  5'- aGGCcCCuGCCGUGAGCC--CACCGGGa -3'
miRNA:   3'- -UCGcGG-CGGCACUUGGugGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 43424 0.66 0.40537
Target:  5'- gGGCGCuCGaCGgu--CCAgUACCAGGCg -3'
miRNA:   3'- -UCGCG-GCgGCacuuGGUgGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 43149 0.69 0.264442
Target:  5'- gGGUGCCGCC-UGAGCUgauguCCcCCAGGa -3'
miRNA:   3'- -UCGCGGCGGcACUUGGu----GGuGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 42362 0.68 0.299153
Target:  5'- gGGUaGuuGCCGaUGGGCUGCCACC-GGUa -3'
miRNA:   3'- -UCG-CggCGGC-ACUUGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 41103 0.7 0.227184
Target:  5'- -uCGCgGCCGUGGACCuuggucucgAUCACCcgAGGCu -3'
miRNA:   3'- ucGCGgCGGCACUUGG---------UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 40926 0.71 0.19962
Target:  5'- cGCGCCguagacGCCGUuGAUgAUCGCCAGGUa -3'
miRNA:   3'- uCGCGG------CGGCAcUUGgUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 40762 1.1 0.000238
Target:  5'- gAGCGCCGCCGUGAACCACCACCAGGCc -3'
miRNA:   3'- -UCGCGGCGGCACUUGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 40566 0.71 0.204889
Target:  5'- uGGCGCgUGCCGacUGAcCUACCgagagggaacGCCAGGCa -3'
miRNA:   3'- -UCGCG-GCGGC--ACUuGGUGG----------UGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 39919 0.67 0.370261
Target:  5'- cGgGCUGUCaucgGAcgGCCACCACCcGGCc -3'
miRNA:   3'- uCgCGGCGGca--CU--UGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 39447 0.66 0.414469
Target:  5'- uGGCGCa-CCGUGGGCCGggaUACUuGGCg -3'
miRNA:   3'- -UCGCGgcGGCACUUGGUg--GUGGuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.